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MW749003.1__QXN70053.1__INTERNEXUS_12__00012

Bact-Vir

MW749003.1__QXN70053.1__INTERNEXUS_12__00012

Identity

Accession:
MW749003 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.70 48.0 4.00e-01 70.6% 100.0%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.70 48.0 4.12e-01 70.6% 75.2%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.69 48.0 4.28e-01 71.8% 100.0%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 47.0 4.12e-01 70.6% 77.4%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 48.0 4.04e-01 74.1% 97.9%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 56.0 5.00e-01 91.8% 87.1%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.68 46.0 4.03e-01 70.6% 74.2%
5muaB01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.67 46.0 3.92e-01 71.8% 100.0%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 50.0 3.95e-01 83.5% 84.7%
2vseA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 47.0 3.95e-01 75.3% 98.6%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 54.0 4.71e-01 91.8% 91.6%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 49.0 3.99e-01 82.4% 89.0%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.63 44.0 4.13e-01 72.9% 82.1%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.63 50.0 4.27e-01 88.2% 97.3%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.63 46.0 4.26e-01 77.6% 92.7%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 47.0 3.85e-01 83.5% 98.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 41.0 3.68e-01 71.8% 100.0%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 42.0 4.00e-01 72.9% 100.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 4.05e-01 82.4% 86.3%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.58 42.0 4.39e-01 81.2% 84.4%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 42.0 2.86e-01 76.5% 57.9%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.45e-01 77.6% 100.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 4.24e-01 70.6% 87.3%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 44.0 2.92e-01 82.4% 67.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 4.31e-01 72.9% 98.2%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.20e-01 84.7% 97.1%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.56 40.0 2.81e-01 76.5% 98.0%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 4.04e-01 92.9% 85.5%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 41.0 3.29e-01 80.0% 77.3%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 40.0 3.83e-01 77.6% 100.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 39.0 3.85e-01 76.5% 75.6%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 47.0 3.23e-01 97.6% 67.8%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.38e-01 95.3% 100.0%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 47.0 3.12e-01 100.0% 89.6%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.53 39.0 3.11e-01 77.6% 40.9%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 40.0 2.76e-01 81.2% 83.1%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 41.0 3.84e-01 83.5% 70.5%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.53 36.0 3.20e-01 72.9% 74.5%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.37e-01 88.2% 90.4%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.87e-01 94.1% 54.4%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 3.10e-01 96.5% 61.0%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 42.0 3.01e-01 85.9% 82.7%
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 43.0 2.88e-01 95.3% 70.5%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.75e-01 74.1% 91.7%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 42.0 3.05e-01 88.2% 83.7%
2vz8A04 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 37.0 2.72e-01 76.5% 94.5%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.03e-01 100.0% 77.3%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.73e-01 88.2% 89.1%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.51 39.0 3.62e-01 87.1% 65.3%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.50 38.0 3.62e-01 81.2% 97.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 35.0 3.68e-01 71.8% 85.3%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.86e-01 91.8% 83.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2801583 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.75 52.0 4.62e-01 71.8% 94.2%
3640483 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 53.0 3.82e-01 77.6% 34.5%
3743299 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.71 52.0 4.78e-01 77.6% 74.5%
4106356 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.70 51.0 4.36e-01 75.3% 97.7%
4146735 219.1.1.159 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6005 0.68 57.0 4.55e-01 91.8% 96.5%
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.76e-01 78.8% 83.1%
4589583 2008.1.1.191 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.65 49.0 3.90e-01 80.0% 82.7%
4009688 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.65 42.0 4.65e-01 80.0% 84.6%
4953129 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 41.0 3.73e-01 80.0% 47.8%
3978624 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 55.0 4.76e-01 92.9% 90.8%
4028738 5.1.4.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.64 47.0 3.13e-01 77.6% 89.6%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 37.0 4.68e-01 77.6% 100.0%
5034888 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.63 44.0 4.22e-01 72.9% 95.0%
3532938 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 49.0 3.14e-01 82.4% 51.1%
3511439 220.1.1.193 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_UBFD1_C 0.62 50.0 4.53e-01 85.9% 83.2%
3509388 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 48.0 3.10e-01 84.7% 26.8%
4963580 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 46.0 4.78e-01 80.0% 97.5%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 39.0 4.66e-01 78.8% 100.0%
3725091 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.61 44.0 2.75e-01 76.5% 31.4%
3296864 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.61 38.0 4.35e-01 75.3% 90.0%
3938605 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.60 47.0 3.91e-01 82.4% 80.7%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 38.0 4.07e-01 70.6% 75.7%
3263031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.83e-01 81.2% 100.0%
5014673 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 41.0 4.20e-01 70.6% 98.8%
5032759 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.60 41.0 4.13e-01 70.6% 96.4%
3734423 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 43.0 2.76e-01 76.5% 30.9%
3348414 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 49.0 3.41e-01 96.5% 67.2%
4025460 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 45.0 3.01e-01 81.2% 59.1%
3331569 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.59 37.0 4.51e-01 71.8% 100.0%
3777744 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 43.0 4.23e-01 76.5% 82.2%
3620934 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 41.0 4.20e-01 71.8% 81.2%
3829614 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.58 43.0 2.80e-01 78.8% 79.5%
3671396 4.1.1.316 beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.58 40.0 4.29e-01 71.8% 82.2%
3412604 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.58 41.0 2.75e-01 75.3% 85.1%
3404272 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 45.0 3.80e-01 88.2% 85.0%
3416404 5.1.4.240 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MRJP 0.56 47.0 3.06e-01 89.4% 58.6%
3401355 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 40.0 3.70e-01 72.9% 68.3%
None 0.56 41.0 2.68e-01 77.6% 43.8%
4949773 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.56 50.0 4.22e-01 100.0% 82.1%
3821077 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 47.0 3.07e-01 91.8% 32.3%
3416133 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 38.0 4.07e-01 71.8% 84.0%
3503771 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 38.0 4.29e-01 71.8% 96.9%
3498357 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 38.0 4.14e-01 71.8% 88.6%
3314636 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 45.0 3.46e-01 91.8% 59.0%
3222195 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 38.0 4.29e-01 72.9% 100.0%
3575745 5.1.4.90 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.54 46.0 3.04e-01 92.9% 39.0%
3775595 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 38.0 4.27e-01 72.9% 98.5%
3535424 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 37.0 4.05e-01 70.6% 91.4%
4003123 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 37.0 4.20e-01 71.8% 96.9%
3874219 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.54 42.0 2.75e-01 83.5% 33.1%
3203654 601.16.1.12 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.53 40.0 3.00e-01 78.8% 88.5%
3213121 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.52 39.0 4.10e-01 82.4% 98.7%
3625911 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 36.0 4.11e-01 87.1% 95.4%
3926623 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.51 38.0 4.06e-01 82.4% 97.3%
3544780 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 40.0 3.23e-01 87.1% 67.8%
3476188 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 40.0 4.30e-01 90.6% 96.0%
3883165 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 42.0 4.08e-01 98.8% 83.0%