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MW749003.1__QXN70300.1__INTERNEXUS_260__00259

Bact-Vir

MW749003.1__QXN70300.1__INTERNEXUS_260__00259

Identity

Accession:
MW749003 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Takahashivirus› Bacillus_phage_vB_BspM_Internexus

TaxID: 2836108

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-79
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3htmA02 6.10.250.3030 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 42.0 5.64e-01 98.7% 100.0%
2vq2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 47.0 3.35e-01 90.8% 23.2%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 44.0 5.02e-01 76.3% 90.9%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 44.0 4.97e-01 76.3% 92.7%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 49.0 3.61e-01 77.6% 60.3%
4gyoA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 45.0 3.20e-01 89.5% 25.0%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.63 43.0 4.19e-01 71.1% 94.1%
4w9rA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 41.0 3.84e-01 94.7% 54.3%
1qqfA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 47.0 3.17e-01 84.2% 30.8%
3nnbA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.58 46.0 2.93e-01 84.2% 29.6%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.57 43.0 4.00e-01 96.1% 64.9%
8bdqA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.56 41.0 2.67e-01 78.9% 45.0%
6v88A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.56 49.0 4.24e-01 96.1% 86.2%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.55 41.0 3.33e-01 78.9% 78.9%
3hqiA02 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 46.0 3.78e-01 94.7% 54.3%
3lcvB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 3.05e-01 82.9% 44.1%
2vkpB00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.53 46.0 4.07e-01 94.7% 73.4%
2gz6A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 42.0 2.74e-01 89.5% 32.0%
7qh7701 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.51 42.0 3.23e-01 94.7% 88.7%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 43.0 3.05e-01 97.4% 55.7%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.50 36.0 3.50e-01 76.3% 98.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4304248 109.4.1.2254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3, PF30475 0.73 47.0 3.97e-01 88.2% 41.7%
3267440 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.71 51.0 4.21e-01 76.3% 66.7%
3639693 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.70 45.0 4.08e-01 88.2% 50.0%
4420955 109.4.1.206 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO 0.66 45.0 3.12e-01 88.2% 22.1%
3609921 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.66 47.0 2.67e-01 76.3% 8.7%
3447119 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.64 46.0 3.72e-01 76.3% 45.5%
4009331 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 49.0 3.95e-01 82.9% 55.0%
3995784 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.63 55.0 4.54e-01 94.7% 58.5%
3932054 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 44.0 3.31e-01 89.5% 29.5%
3374526 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.62 55.0 4.74e-01 96.1% 73.9%
4077510 109.4.1.1433 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_8, TPR_12 0.61 42.0 3.22e-01 86.8% 31.8%
3214939 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 52.0 4.10e-01 94.7% 54.2%
3662655 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 53.0 4.33e-01 94.7% 87.7%
3652769 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.60 47.0 3.87e-01 84.2% 68.9%
3179895 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.58 49.0 3.81e-01 89.5% 49.7%
3726958 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.58 50.0 3.78e-01 94.7% 55.0%
3937791 633.10.1.18 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › THU_Piezo1 0.57 51.0 4.68e-01 100.0% 81.0%
3923329 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 48.0 3.98e-01 94.7% 60.7%
3855592 226.1.1.10 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › KLHL33-like_BTB_POZ 0.55 48.0 4.05e-01 94.7% 64.8%
3264357 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 45.0 3.21e-01 88.2% 37.7%
3547743 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.55 48.0 3.72e-01 94.7% 50.6%
3759810 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.55 47.0 3.66e-01 94.7% 53.9%
3394708 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 46.0 3.76e-01 93.4% 59.3%
3908431 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 47.0 3.95e-01 93.4% 68.0%
3562584 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 47.0 3.66e-01 94.7% 50.6%
3434454 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 43.0 3.16e-01 86.8% 40.5%
3254298 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.53 46.0 3.23e-01 94.7% 35.9%
3423652 2007.9.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.51 43.0 3.35e-01 100.0% 46.5%
3693772 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.50 42.0 3.14e-01 90.8% 46.3%
D2 high residues 107-208
PDB
Domain cluster: rep: OM728297.1__WCS68206.1__Goe21_00960__00096__D108-190