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MW749006.1__QXN70448.1__AGENTSMITH_42__00042

Bact-Vir

MW749006.1__QXN70448.1__AGENTSMITH_42__00042

Identity

Accession:
MW749006 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.78 54.0 4.22e-01 72.3% 61.8%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.76 55.0 3.35e-01 75.4% 23.9%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.74 65.0 4.84e-01 93.8% 70.0%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.73 50.0 4.03e-01 70.8% 40.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 50.0 3.86e-01 73.8% 49.0%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 51.0 5.14e-01 75.4% 95.5%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.70 53.0 4.54e-01 83.1% 50.5%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.70 55.0 4.07e-01 86.2% 90.0%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.69 61.0 4.46e-01 96.9% 37.4%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.69 50.0 4.26e-01 75.4% 56.0%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 41.0 4.25e-01 100.0% 63.9%
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 47.0 4.23e-01 72.3% 59.6%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 49.0 4.21e-01 76.9% 59.0%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 46.0 4.27e-01 72.3% 75.0%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 48.0 4.06e-01 75.4% 60.6%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 46.0 4.05e-01 73.8% 67.0%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.66 55.0 3.54e-01 95.4% 45.3%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 47.0 4.14e-01 76.9% 60.8%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.65 46.0 4.10e-01 73.8% 57.8%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.64 44.0 3.47e-01 72.3% 72.7%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.64 56.0 4.08e-01 100.0% 57.6%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.63 55.0 4.06e-01 100.0% 92.3%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 46.0 3.95e-01 78.5% 58.7%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 45.0 3.99e-01 76.9% 59.8%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.62 53.0 3.35e-01 100.0% 42.8%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.62 44.0 3.43e-01 75.4% 91.6%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.62 51.0 3.88e-01 90.8% 83.1%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.61 41.0 3.97e-01 70.8% 80.3%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.61 52.0 4.38e-01 100.0% 60.2%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 45.0 3.85e-01 78.5% 60.2%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.60 52.0 3.48e-01 100.0% 55.9%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.60 41.0 4.47e-01 72.3% 87.0%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.60 51.0 4.19e-01 93.8% 100.0%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.32e-01 98.5% 48.8%
3holA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.59 51.0 3.98e-01 98.5% 68.3%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 52.0 3.59e-01 100.0% 72.9%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 41.0 3.53e-01 72.3% 88.9%
3c5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 40.0 2.56e-01 73.8% 22.1%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 50.0 3.65e-01 100.0% 89.6%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 3.86e-01 100.0% 80.3%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.56 44.0 3.44e-01 100.0% 37.3%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.92e-01 96.9% 86.8%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 41.0 2.73e-01 83.1% 63.5%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.99e-01 87.7% 93.1%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 39.0 3.26e-01 90.8% 50.7%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.72e-01 98.5% 42.9%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.67e-01 78.5% 79.4%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483689 241.6.1.1 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.81 56.0 4.16e-01 72.3% 52.9%
3786425 241.6.1.1 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.80 57.0 4.40e-01 73.8% 73.1%
3177293 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.79 56.0 4.43e-01 73.8% 70.4%
3479101 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.79 55.0 4.38e-01 72.3% 66.7%
3439467 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.78 54.0 4.22e-01 72.3% 70.0%
3935058 292.2.1.5 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.77 60.0 5.54e-01 100.0% 64.7%
3944566 809.1.1.10 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › EndoU_bacteria 0.77 45.0 4.70e-01 80.0% 63.3%
3337688 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.76 53.0 4.16e-01 73.8% 68.1%
3179848 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.75 63.0 4.86e-01 90.8% 74.1%
3815530 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.75 53.0 4.22e-01 73.8% 72.8%
1140350 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.74 64.0 4.77e-01 93.8% 67.7%
3344767 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.74 51.0 4.11e-01 72.3% 72.0%
4979564 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.73 53.0 5.21e-01 96.9% 72.9%
5020511 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.72 54.0 4.47e-01 80.0% 60.0%
3283270 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.71 63.0 4.93e-01 100.0% 85.0%
3769735 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 49.0 4.25e-01 72.3% 65.0%
3323208 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.71 62.0 4.41e-01 96.9% 70.0%
4371937 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.71 62.0 3.95e-01 100.0% 24.1%
3989712 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.71 62.0 4.02e-01 100.0% 26.0%
4677581 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 61.0 4.01e-01 100.0% 29.3%
2649512 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.70 52.0 3.69e-01 78.5% 30.7%
4002401 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.70 48.0 4.10e-01 72.3% 69.5%
3228184 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.69 55.0 4.36e-01 84.6% 51.2%
4635042 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 61.0 3.98e-01 100.0% 28.6%
4029521 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 55.0 3.98e-01 86.2% 70.3%
3966051 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 56.0 4.36e-01 87.7% 45.2%
4381207 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 60.0 3.95e-01 100.0% 27.0%
3971682 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 60.0 3.92e-01 100.0% 26.4%
4594780 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.68 48.0 3.02e-01 75.4% 29.2%
3279800 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.67 58.0 4.50e-01 100.0% 87.9%
3500606 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.66 58.0 4.23e-01 100.0% 85.9%
3279724 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.66 48.0 3.86e-01 78.5% 44.6%
4970248 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.66 57.0 3.96e-01 96.9% 52.6%
3379143 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.65 54.0 3.66e-01 93.8% 38.4%
4334199 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.65 52.0 4.23e-01 87.7% 51.2%
4032017 2004.1.1.301 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.64 53.0 3.13e-01 98.5% 20.2%
3393233 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 52.0 3.49e-01 96.9% 68.6%
3888413 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.62 54.0 3.09e-01 98.5% 52.3%
3839234 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.62 44.0 3.83e-01 75.4% 52.4%
5039064 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 55.0 3.39e-01 98.5% 46.8%
3396674 883.1.1.7 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › MMM1 0.62 50.0 3.46e-01 87.7% 61.0%
3337354 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.62 56.0 4.39e-01 98.5% 100.0%
5054047 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 43.0 4.17e-01 73.8% 82.7%
5014541 5090.1.1.11 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.61 43.0 3.58e-01 75.4% 40.8%
4946001 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 54.0 3.39e-01 100.0% 30.7%
3600915 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.61 54.0 3.35e-01 100.0% 32.8%
4114928 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.61 49.0 3.54e-01 87.7% 31.9%
3516397 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.60 53.0 3.86e-01 100.0% 43.8%
4034016 243.10.1.1 a+b two layers › Cystatin-like › Lin0334 protein › Lin0334 protein › DUF1433 0.60 53.0 4.42e-01 100.0% 58.3%
4957480 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.60 52.0 3.25e-01 100.0% 33.4%
4471013 11.1.1.456 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YtkA 0.60 47.0 3.94e-01 86.2% 58.3%
3396360 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 53.0 4.24e-01 100.0% 52.3%
3425789 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.58 51.0 3.31e-01 100.0% 92.5%
3251443 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.57 51.0 4.12e-01 100.0% 79.2%
3499456 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.57 48.0 2.88e-01 96.9% 33.3%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 38.0 2.32e-01 70.8% 10.9%
3916526 719.1.1.1 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.56 51.0 4.02e-01 100.0% 99.2%
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.56 48.0 4.38e-01 96.9% 70.5%
3360012 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.56 44.0 3.24e-01 87.7% 89.7%
3566665 883.1.1.7 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › MMM1 0.54 47.0 3.33e-01 100.0% 63.8%
4932609 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 36.0 3.69e-01 70.8% 76.9%
3245956 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.54 44.0 3.81e-01 98.5% 92.2%
3964085 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 37.0 3.04e-01 72.3% 38.5%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.74e-01 72.3% 83.3%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 45.0 4.05e-01 96.9% 91.1%
3831169 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.51 42.0 2.91e-01 100.0% 56.0%
4461457 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 34.0 3.51e-01 72.3% 76.6%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.50 34.0 3.58e-01 72.3% 83.3%