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MW749006.1__QXN70480.1__AGENTSMITH_76__00074

Bact-Vir

MW749006.1__QXN70480.1__AGENTSMITH_76__00074

Identity

Accession:
MW749006 ↗
Kingdom:
phage

Quality

65.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-110
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.73 62.0 4.49e-01 100.0% 33.2%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.71 63.0 4.29e-01 100.0% 32.5%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 39.0 4.79e-01 96.8% 85.5%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 52.0 4.39e-01 91.6% 48.8%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 59.0 4.17e-01 100.0% 38.6%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 58.0 4.07e-01 100.0% 33.9%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 51.0 4.27e-01 91.6% 47.3%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 58.0 3.89e-01 100.0% 30.2%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.65 40.0 3.30e-01 76.8% 34.9%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 57.0 4.01e-01 100.0% 35.8%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 58.0 4.00e-01 100.0% 31.0%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 56.0 4.08e-01 98.9% 58.7%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 58.0 4.06e-01 100.0% 39.2%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.64 56.0 4.82e-01 100.0% 60.7%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.64 50.0 5.25e-01 96.8% 96.4%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.64 52.0 3.81e-01 100.0% 31.8%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 54.0 3.76e-01 100.0% 35.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 42.0 4.78e-01 93.7% 94.4%
1tyeA00 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.62 54.0 3.53e-01 100.0% 25.7%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 54.0 3.74e-01 100.0% 36.8%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 3.88e-01 91.6% 40.5%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 3.76e-01 91.6% 40.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 53.0 3.69e-01 100.0% 46.4%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 43.0 4.60e-01 93.7% 87.7%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 3.65e-01 90.5% 39.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 45.0 3.94e-01 78.9% 95.7%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 37.0 4.27e-01 75.8% 88.1%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.66e-01 100.0% 39.6%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 45.0 3.33e-01 84.2% 49.4%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 36.0 4.09e-01 84.2% 89.4%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 49.0 3.50e-01 100.0% 30.1%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 51.0 4.37e-01 100.0% 76.0%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.57e-01 90.5% 41.7%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.56 48.0 3.44e-01 91.6% 88.9%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.51e-01 91.6% 49.3%
2n93A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.74e-01 91.6% 57.7%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.55e-01 73.7% 94.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 42.0 3.13e-01 83.2% 47.1%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 4.27e-01 88.4% 85.6%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.04e-01 97.9% 63.6%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 3.77e-01 90.5% 71.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.53e-01 80.0% 69.6%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 39.0 3.54e-01 91.6% 57.9%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.52e-01 90.5% 56.0%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.45e-01 85.3% 79.5%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.46e-01 90.5% 57.2%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 3.85e-01 90.5% 95.1%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3660454 5.1.5.96 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.73 62.0 4.36e-01 100.0% 29.8%
4951151 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.73 62.0 4.16e-01 100.0% 25.3%
3611076 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.72 66.0 4.46e-01 100.0% 30.0%
3405890 5.1.3.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.72 66.0 4.49e-01 100.0% 35.1%
3458155 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.72 64.0 4.48e-01 100.0% 30.8%
5013654 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.71 52.0 3.55e-01 100.0% 22.2%
3465186 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.71 63.0 5.73e-01 98.9% 83.1%
3831579 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.71 64.0 4.45e-01 100.0% 34.9%
3928508 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.71 63.0 4.28e-01 100.0% 28.2%
3437840 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.70 59.0 4.17e-01 100.0% 29.0%
3744781 109.4.1.69 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 0.70 63.0 4.40e-01 100.0% 40.0%
5052931 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 62.0 4.10e-01 100.0% 32.7%
4938517 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 58.0 4.10e-01 100.0% 29.7%
3940325 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 62.0 4.44e-01 100.0% 37.0%
5056195 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 61.0 4.18e-01 100.0% 34.6%
3325704 5.1.4.222 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 0.68 61.0 4.13e-01 100.0% 29.3%
3277064 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 53.0 4.45e-01 94.7% 48.2%
3653889 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 61.0 4.13e-01 100.0% 31.5%
3660574 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 60.0 4.03e-01 100.0% 30.5%
3324078 5.1.2.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.67 59.0 4.10e-01 100.0% 34.8%
3312525 5.1.2.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N+INV_N 0.67 59.0 4.05e-01 100.0% 32.3%
4955261 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 60.0 4.18e-01 100.0% 35.7%
3706874 5.1.3.243 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_WDR35_2nd 0.67 55.0 3.78e-01 100.0% 26.7%
None 0.67 61.0 4.00e-01 100.0% 33.5%
3345486 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.67 59.0 4.11e-01 100.0% 33.2%
3351597 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.66 58.0 4.03e-01 100.0% 31.8%
3814287 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 59.0 4.02e-01 100.0% 40.1%
5051718 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 59.0 3.94e-01 100.0% 33.4%
4024468 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.66 50.0 3.94e-01 90.5% 38.5%
3238362 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 60.0 4.11e-01 100.0% 42.3%
3929846 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 59.0 4.11e-01 100.0% 42.2%
148788 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.65 58.0 4.00e-01 100.0% 31.0%
4294271 5.1.3.143 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_3 0.65 58.0 3.87e-01 100.0% 33.2%
2336349 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 52.0 5.39e-01 100.0% 95.5%
3626264 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 58.0 4.09e-01 100.0% 42.8%
1249950 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.64 45.0 4.74e-01 96.8% 83.3%
4929596 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 57.0 3.66e-01 100.0% 21.5%
3926611 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.63 58.0 3.96e-01 100.0% 38.4%
3397645 5.1.4.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.63 55.0 3.84e-01 100.0% 29.1%
5045854 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.63 44.0 4.76e-01 72.6% 95.0%
5071561 4252.1.1.12 beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.63 43.0 3.57e-01 71.6% 52.4%
5079413 5.1.3.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.63 56.0 4.10e-01 100.0% 49.8%
5038443 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 41.0 4.50e-01 89.5% 84.0%
3852280 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 56.0 3.91e-01 100.0% 35.7%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 40.0 4.72e-01 90.5% 96.9%
4001295 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.61 53.0 3.66e-01 100.0% 44.2%
4304850 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.61 53.0 3.69e-01 100.0% 28.2%
4938162 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 4.61e-01 87.4% 81.1%
3743855 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 53.0 3.60e-01 100.0% 32.3%
3578425 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.60 53.0 3.56e-01 100.0% 47.5%
4108772 243.3.1.10 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.60 39.0 4.31e-01 87.4% 84.0%
5054384 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.60 37.0 4.15e-01 76.8% 82.9%
3740081 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.59 49.0 4.71e-01 91.6% 93.6%
3903171 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.59 53.0 3.70e-01 100.0% 38.1%
5036065 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 44.0 4.79e-01 88.4% 100.0%
5045333 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 39.0 4.50e-01 88.4% 95.7%
2387834 5.4.1.0 beta duplicates or obligate multimers › beta-propeller-like 0.58 51.0 4.43e-01 100.0% 66.0%
4431947 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.58 50.0 3.56e-01 100.0% 37.5%
4982262 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.58 41.0 4.50e-01 89.5% 94.7%
3324335 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.57 42.0 3.51e-01 88.4% 43.5%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 37.0 3.34e-01 100.0% 46.4%
3742752 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.56 38.0 2.93e-01 74.7% 31.7%
1870982 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.56 45.0 3.63e-01 90.5% 42.8%
5052357 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.56 39.0 3.10e-01 76.8% 36.3%
3415592 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.55 39.0 3.39e-01 92.6% 47.3%
4471281 10.1.1.89 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26321 0.55 49.0 3.67e-01 100.0% 50.2%
4950432 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.54 43.0 3.44e-01 85.3% 42.6%
2320506 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 39.0 3.42e-01 75.8% 78.5%
4188370 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.54 48.0 3.48e-01 100.0% 42.9%
3257304 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.52 46.0 4.47e-01 94.7% 96.2%
3255797 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 4.14e-01 92.6% 76.7%
3201065 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.52 40.0 3.12e-01 83.2% 94.9%
3602236 284.1.3.3 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.52 37.0 3.72e-01 73.7% 72.6%
4966884 102.1.1.181 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF763 0.50 44.0 3.54e-01 98.9% 52.6%
D2 high residues 129-230
PDB