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MW749006.1__QXN70491.1__AGENTSMITH_87__00085

Bact-Vir

MW749006.1__QXN70491.1__AGENTSMITH_87__00085

Identity

Accession:
MW749006 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_vB_BspM_AgentSmith

TaxID: 2836110

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-77
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 43.0 3.79e-01 87.8% 46.8%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.59 45.0 4.05e-01 83.8% 90.6%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.38e-01 77.0% 93.9%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 42.0 3.65e-01 77.0% 60.2%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.32e-01 74.3% 86.4%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.57 40.0 3.35e-01 74.3% 68.1%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 41.0 3.48e-01 75.7% 52.1%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 41.0 3.60e-01 77.0% 62.3%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 41.0 3.67e-01 77.0% 73.6%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 38.0 3.30e-01 73.0% 54.1%
5hr9A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 40.0 3.63e-01 78.4% 67.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.44e-01 71.6% 52.0%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.54 37.0 3.05e-01 70.3% 40.6%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.78e-01 86.5% 74.8%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.52 40.0 3.35e-01 82.4% 82.8%
5eqjB01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 35.0 3.61e-01 70.3% 90.1%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 3.43e-01 83.8% 74.8%
3l60A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 40.0 2.97e-01 86.5% 70.9%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.52 30.0 3.00e-01 70.3% 53.3%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.50 34.0 3.23e-01 70.3% 63.4%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4137160 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.73 50.0 4.86e-01 70.3% 82.5%
4980977 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.72 49.0 4.81e-01 70.3% 76.2%
5030093 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.72 49.0 4.92e-01 70.3% 80.0%
4423189 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.72 48.0 4.86e-01 70.3% 81.3%
4517008 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.71 48.0 4.72e-01 70.3% 80.0%
5042087 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.71 48.0 4.85e-01 70.3% 82.7%
5011007 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.70 48.0 4.81e-01 70.3% 81.1%
5040888 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.69 46.0 4.56e-01 70.3% 80.0%
1558579 274.1.1.17 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › CofB_pilin_dom 0.61 51.0 3.65e-01 95.9% 45.8%
3622571 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.60 36.0 3.11e-01 86.5% 35.2%
1871771 1.1.5.43 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.59 41.0 3.64e-01 74.3% 52.3%
7151 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.58 41.0 3.18e-01 75.7% 40.1%
4025349 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.58 43.0 3.62e-01 95.9% 45.4%
5076492 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.58 42.0 3.17e-01 77.0% 38.4%
4961681 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.58 42.0 3.23e-01 77.0% 41.8%
140040 4216.1.1.3 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like 0.57 40.0 3.35e-01 74.3% 68.1%
3290403 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.56 40.0 3.03e-01 77.0% 48.7%
4007558 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.56 40.0 3.13e-01 77.0% 42.4%
4245466 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.56 35.0 3.97e-01 71.6% 94.0%
4982667 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.55 40.0 3.13e-01 77.0% 42.4%
4983769 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.55 40.0 3.07e-01 77.0% 40.0%
80896 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.55 40.0 2.91e-01 77.0% 51.9%
3781851 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.54 45.0 3.11e-01 97.3% 27.3%
3974799 1.1.5.18 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.54 38.0 2.83e-01 74.3% 34.0%
4978506 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.53 43.0 3.28e-01 93.2% 51.6%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 35.0 3.31e-01 70.3% 64.2%
4656857 140.1.1.4 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.52 39.0 2.92e-01 81.1% 49.2%
4976626 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.51 44.0 3.20e-01 100.0% 35.6%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 34.0 3.00e-01 70.3% 52.5%
5058457 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 35.0 3.68e-01 73.0% 95.4%
1839933 10.12.1.60 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AUDH_Cupin 0.50 34.0 2.99e-01 71.6% 62.9%
4952130 3714.1.1.1 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical 0.50 42.0 3.08e-01 98.6% 33.5%