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MW749008.1__QYA57379.1__MIFENG_36__00034
Bact-VirMW749008.1__QYA57379.1__MIFENG_36__00034
Identity
- Accession:
- MW749008 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-44
Domain cluster:
representative
CATH (57)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.91 | 82.0 | 6.12e-01 | 100.0% | 42.4% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.89 | 77.0 | 5.97e-01 | 92.9% | 89.2% |
| 3fm9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.88 | 74.0 | 5.97e-01 | 92.9% | 50.0% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.88 | 69.0 | 6.62e-01 | 88.1% | 75.0% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.84 | 73.0 | 5.58e-01 | 100.0% | 47.4% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.84 | 64.0 | 5.33e-01 | 85.7% | 48.6% |
| 1v1gA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.83 | 75.0 | 4.77e-01 | 100.0% | 27.1% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.83 | 76.0 | 5.92e-01 | 100.0% | 90.4% |
| 2be4A02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.81 | 67.0 | 5.04e-01 | 95.2% | 38.6% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.78 | 55.0 | 3.35e-01 | 78.6% | 12.2% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.77 | 59.0 | 5.07e-01 | 90.5% | 52.1% |
| 3ip4C01 | 1.10.20.60 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain | 0.77 | 63.0 | 6.25e-01 | 100.0% | 90.9% |
| 1l8qA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.77 | 56.0 | 5.41e-01 | 85.7% | 69.4% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.77 | 61.0 | 5.12e-01 | 90.5% | 52.0% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.76 | 59.0 | 5.49e-01 | 90.5% | 68.4% |
| 7ar7T01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.76 | 52.0 | 4.36e-01 | 78.6% | 41.3% |
| 3a1kA01 | 1.10.20.60 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain | 0.76 | 61.0 | 5.74e-01 | 97.6% | 74.1% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.75 | 64.0 | 5.10e-01 | 100.0% | 71.9% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.75 | 63.0 | 5.45e-01 | 100.0% | 61.2% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.74 | 62.0 | 5.26e-01 | 100.0% | 56.0% |
| 1l0oC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 48.0 | 4.35e-01 | 83.3% | 49.1% |
| 6nklB00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.74 | 54.0 | 3.87e-01 | 83.3% | 26.7% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.73 | 63.0 | 5.25e-01 | 100.0% | 69.3% |
| 2bl0C01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.73 | 57.0 | 4.75e-01 | 88.1% | 54.7% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.72 | 50.0 | 3.60e-01 | 81.0% | 26.5% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.71 | 56.0 | 4.71e-01 | 95.2% | 50.7% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.71 | 61.0 | 3.99e-01 | 100.0% | 84.1% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.71 | 55.0 | 5.38e-01 | 92.9% | 79.2% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.70 | 57.0 | 5.46e-01 | 97.6% | 86.5% |
| 2blfB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.70 | 53.0 | 4.76e-01 | 85.7% | 57.1% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.70 | 55.0 | 5.15e-01 | 90.5% | 79.2% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.70 | 52.0 | 4.02e-01 | 81.0% | 38.8% |
| 1ni5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.70 | 57.0 | 4.54e-01 | 92.9% | 65.1% |
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 3.90e-01 | 83.3% | 37.8% |
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 51.0 | 4.86e-01 | 97.6% | 69.8% |
| 4p63D00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.67 | 51.0 | 3.12e-01 | 90.5% | 13.1% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.67 | 47.0 | 3.59e-01 | 83.3% | 30.7% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.67 | 57.0 | 4.22e-01 | 100.0% | 81.8% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 58.0 | 4.81e-01 | 100.0% | 89.5% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.66 | 56.0 | 4.33e-01 | 95.2% | 47.9% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.66 | 54.0 | 3.75e-01 | 100.0% | 26.9% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.65 | 56.0 | 3.57e-01 | 100.0% | 19.9% |
| 2idgA00 | 1.10.3480.10 | Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like | 0.64 | 49.0 | 3.37e-01 | 95.2% | 22.6% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 51.0 | 3.32e-01 | 92.9% | 19.9% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.64 | 51.0 | 4.07e-01 | 100.0% | 87.3% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 48.0 | 4.41e-01 | 90.5% | 61.3% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 47.0 | 3.89e-01 | 85.7% | 96.6% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.63 | 49.0 | 4.45e-01 | 92.9% | 68.8% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.62 | 44.0 | 4.30e-01 | 83.3% | 67.3% |
| 7cyuA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.62 | 51.0 | 4.71e-01 | 95.2% | 70.2% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.62 | 52.0 | 3.16e-01 | 100.0% | 48.2% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.62 | 54.0 | 4.24e-01 | 100.0% | 92.1% |
| 1s9uA00 | 1.10.3480.10 | Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like | 0.60 | 54.0 | 3.42e-01 | 100.0% | 67.7% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.60 | 51.0 | 3.50e-01 | 95.2% | 53.0% |
| 1h3fA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 48.0 | 3.21e-01 | 100.0% | 23.6% |
| 3cm0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 50.0 | 3.33e-01 | 97.6% | 23.9% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 50.0 | 4.30e-01 | 97.6% | 69.2% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.90 | 75.0 | 6.35e-01 | 92.9% | 58.5% |
| 3263465 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.89 | 74.0 | 5.95e-01 | 97.6% | 48.8% |
| 4934293 | 4993.1.1.0 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit | 0.87 | 78.0 | 6.23e-01 | 100.0% | 53.8% |
| 4530108 | 3711.1.1.59 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › CemA | 0.87 | 77.0 | 5.80e-01 | 100.0% | 42.4% |
| 3343513 | 192.8.1.268 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CemA | 0.87 | 76.0 | 5.65e-01 | 100.0% | 41.3% |
| 4042207 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.86 | 75.0 | 5.27e-01 | 100.0% | 35.4% |
| 4458447 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.86 | 73.0 | 6.01e-01 | 92.9% | 54.3% |
| 4879388 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.85 | 74.0 | 5.83e-01 | 100.0% | 49.4% |
| 4579131 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.85 | 74.0 | 4.58e-01 | 100.0% | 19.2% |
| 4929054 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.84 | 64.0 | 4.05e-01 | 85.7% | 17.5% |
| 2337274 | 4993.1.1.2 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › AtzG-like | 0.84 | 72.0 | 6.30e-01 | 100.0% | 63.6% |
| 3945729 | 604.32.1.0 ↗ | alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY | 0.84 | 68.0 | 4.67e-01 | 88.1% | 28.5% |
| 3643664 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.83 | 73.0 | 6.05e-01 | 100.0% | 56.0% |
| 3481731 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.83 | 72.0 | 5.54e-01 | 100.0% | 48.4% |
| 4947024 | 4993.1.1.0 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit | 0.83 | 72.0 | 5.49e-01 | 100.0% | 43.2% |
| 4303875 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.83 | 70.0 | 5.35e-01 | 92.9% | 58.9% |
| 3479272 | 6103.1.1.1 ↗ | alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › DAXX_hist_bd | 0.83 | 71.0 | 4.53e-01 | 100.0% | 21.0% |
| 3816078 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.83 | 72.0 | 5.19e-01 | 100.0% | 35.0% |
| 4669270 | 6026.1.1.42 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › CemA | 0.83 | 70.0 | 5.66e-01 | 100.0% | 50.6% |
| 3521127 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.83 | 72.0 | 4.66e-01 | 100.0% | 27.6% |
| 3919633 | 108.1.1.104 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 | 0.82 | 72.0 | 4.66e-01 | 100.0% | 27.6% |
| 3304542 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.82 | 71.0 | 5.47e-01 | 100.0% | 57.9% |
| 3276308 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.82 | 71.0 | 5.08e-01 | 97.6% | 35.8% |
| 3587847 | 5076.2.1.4 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › GPDPase_memb | 0.81 | 69.0 | 4.59e-01 | 95.2% | 55.0% |
| 4107418 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.81 | 68.0 | 5.23e-01 | 100.0% | 42.1% |
| 4974262 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.81 | 66.0 | 5.89e-01 | 92.9% | 63.3% |
| 4440069 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.81 | 68.0 | 5.34e-01 | 100.0% | 44.4% |
| 4138369 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.81 | 68.0 | 5.24e-01 | 100.0% | 42.1% |
| 4076354 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.81 | 68.0 | 5.22e-01 | 100.0% | 42.1% |
| 3726598 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.81 | 63.0 | 5.31e-01 | 85.7% | 51.4% |
| 4669947 | 4993.1.1.0 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit | 0.80 | 66.0 | 5.24e-01 | 100.0% | 44.4% |
| 3643488 | 192.15.1.11 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA | 0.80 | 68.0 | 5.73e-01 | 100.0% | 57.3% |
| 4646832 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 65.0 | 4.08e-01 | 92.9% | 18.1% |
| 4610257 | 6130.1.1.0 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain | 0.79 | 67.0 | 5.86e-01 | 97.6% | 69.2% |
| None | — | 0.79 | 64.0 | 4.06e-01 | 92.9% | 19.0% | |
| 3287685 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.79 | 67.0 | 5.17e-01 | 100.0% | 43.2% |
| 5036643 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.79 | 65.0 | 5.05e-01 | 100.0% | 42.1% |
| 4982784 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.79 | 64.0 | 5.71e-01 | 92.9% | 63.3% |
| 3324564 | 108.1.1.51 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › NADPH_Ox | 0.79 | 68.0 | 4.45e-01 | 100.0% | 28.3% |
| 4943098 | 2004.1.1.1214 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RCF1-5-like_lid | 0.79 | 64.0 | 4.04e-01 | 92.9% | 18.5% |
| 4941940 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.79 | 64.0 | 4.05e-01 | 92.9% | 19.0% |
| 3414602 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 69.0 | 5.68e-01 | 100.0% | 100.0% |
| 3811948 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.78 | 65.0 | 5.62e-01 | 97.6% | 65.7% |
| 5043976 | 3678.1.1.0 ↗ | alpha arrays › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain | 0.78 | 67.0 | 4.88e-01 | 100.0% | 37.5% |
| 5027585 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.78 | 63.0 | 5.62e-01 | 92.9% | 63.3% |
| 4028941 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.77 | 60.0 | 5.10e-01 | 85.7% | 51.4% |
| 3297020 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.77 | 67.0 | 5.10e-01 | 100.0% | 54.0% |
| 3996730 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.77 | 63.0 | 5.44e-01 | 92.9% | 58.5% |
| 3198609 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.77 | 66.0 | 4.05e-01 | 100.0% | 16.7% |
| 3321602 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.77 | 67.0 | 4.36e-01 | 100.0% | 28.4% |
| 3303639 | 5022.1.1.3 ↗ | extended segments › Subunit XII of photosystem I reaction centre, PsaM › Subunit XII of photosystem I reaction centre, PsaM › Subunit XII of photosystem I reaction centre, PsaM › CemA | 0.77 | 63.0 | 6.09e-01 | 100.0% | 86.0% |
| 3518379 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.76 | 62.0 | 5.68e-01 | 100.0% | 69.1% |
| 4939138 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 61.0 | 5.65e-01 | 92.9% | 69.1% |
| 5045524 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.75 | 61.0 | 5.41e-01 | 92.9% | 63.3% |
| 3873692 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.75 | 57.0 | 5.37e-01 | 88.1% | 70.9% |
| 3274011 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 55.0 | 4.85e-01 | 81.0% | 52.3% |
| 3555794 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.75 | 64.0 | 5.17e-01 | 100.0% | 62.4% |
| 4931061 | 2003.1.1.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ELFV_dehydrog | 0.75 | 63.0 | 3.96e-01 | 100.0% | 83.4% |
| 3533067 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.74 | 57.0 | 4.92e-01 | 88.1% | 55.7% |
| 3164721 | 1078.1.1.0 ↗ | extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit | 0.73 | 64.0 | 5.01e-01 | 100.0% | 50.0% |
| 3612596 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.73 | 57.0 | 5.39e-01 | 88.1% | 72.0% |
| 3831795 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.72 | 60.0 | 3.90e-01 | 97.6% | 21.0% |
| 3437734 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.71 | 48.0 | 4.20e-01 | 71.4% | 49.2% |
| 972045 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.71 | 57.0 | 4.86e-01 | 100.0% | 78.8% |
| 3563442 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.71 | 57.0 | 4.86e-01 | 95.2% | 88.0% |
| 3209229 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.71 | 60.0 | 3.71e-01 | 97.6% | 17.0% |
| 3642427 | 103.1.1.123 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PLAC8 | 0.70 | 52.0 | 4.25e-01 | 85.7% | 41.2% |
| 3270778 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.69 | 58.0 | 4.48e-01 | 97.6% | 51.0% |
| 4991630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 55.0 | 4.98e-01 | 92.9% | 65.0% |
| 3183783 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.69 | 56.0 | 4.31e-01 | 100.0% | 57.3% |
| 4024734 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.69 | 57.0 | 3.91e-01 | 100.0% | 24.8% |
| 3256889 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.69 | 56.0 | 4.32e-01 | 100.0% | 59.1% |
| 3585753 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.68 | 56.0 | 4.52e-01 | 100.0% | 77.8% |
| 5044210 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 53.0 | 4.57e-01 | 90.5% | 52.9% |
| 5024109 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.67 | 59.0 | 3.70e-01 | 100.0% | 26.7% |
| 4939550 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.67 | 58.0 | 4.49e-01 | 100.0% | 47.4% |
| 4015292 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.64 | 53.0 | 4.36e-01 | 95.2% | 97.5% |
| 4220501 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.64 | 52.0 | 4.13e-01 | 97.6% | 46.3% |
| 3654648 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.62 | 51.0 | 4.44e-01 | 100.0% | 64.3% |
| 4353063 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.61 | 53.0 | 3.59e-01 | 100.0% | 28.1% |
D2
medium
residues 50-112
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bddA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.70 | 51.0 | 4.02e-01 | 77.8% | 48.0% |
| 5xuhA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.67 | 48.0 | 3.82e-01 | 76.2% | 44.8% |
| 1fthA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.65 | 48.0 | 3.88e-01 | 77.8% | 46.2% |
| 2wdoA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.63 | 45.0 | 3.63e-01 | 76.2% | 42.3% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.61 | 41.0 | 3.31e-01 | 71.4% | 37.3% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.59 | 44.0 | 4.25e-01 | 79.4% | 76.1% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 40.0 | 3.72e-01 | 71.4% | 86.3% |
| 1vrbD01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.59 | 40.0 | 2.78e-01 | 71.4% | 76.8% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.58 | 40.0 | 3.25e-01 | 73.0% | 44.9% |
| 3qh4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 40.0 | 2.67e-01 | 82.5% | 88.5% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.55 | 38.0 | 3.83e-01 | 74.6% | 90.8% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.54 | 38.0 | 2.76e-01 | 74.6% | 46.4% |
| 6njeA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.54 | 46.0 | 2.94e-01 | 93.7% | 42.8% |
| 3lyxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 38.0 | 3.13e-01 | 76.2% | 45.0% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 2.61e-01 | 81.0% | 58.0% |
| 1c7uA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.53 | 43.0 | 4.31e-01 | 88.9% | 88.9% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.93e-01 | 92.1% | 98.8% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3232252 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.71 | 58.0 | 3.57e-01 | 87.3% | 23.3% |
| 3238018 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.70 | 57.0 | 3.60e-01 | 87.3% | 23.8% |
| 3966249 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.69 | 53.0 | 3.86e-01 | 79.4% | 63.2% |
| 3927225 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 64.0 | 4.28e-01 | 100.0% | 30.6% |
| 3782051 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.67 | 61.0 | 3.58e-01 | 100.0% | 33.5% |
| 3592627 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.66 | 54.0 | 3.47e-01 | 87.3% | 21.5% |
| 3590896 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 48.0 | 2.97e-01 | 77.8% | 28.1% |
| 3497675 | 2004.1.1.325 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC-Trs85 | 0.65 | 35.0 | 2.61e-01 | 74.6% | 20.6% |
| 3931057 | 558.1.1.0 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain | 0.63 | 31.0 | 3.24e-01 | 79.4% | 50.0% |
| 3735459 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.63 | 45.0 | 2.69e-01 | 76.2% | 42.8% |
| 3687315 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 56.0 | 3.76e-01 | 96.8% | 28.0% |
| 4582396 | 301.8.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase | 0.62 | 44.0 | 3.64e-01 | 76.2% | 40.9% |
| 3203073 | 867.1.1.1 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coprogen_oxidas | 0.62 | 47.0 | 2.89e-01 | 81.0% | 81.6% |
| 4416596 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.61 | 54.0 | 3.47e-01 | 100.0% | 32.5% |
| 3318217 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.60 | 47.0 | 4.36e-01 | 84.1% | 80.0% |
| 5053627 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.60 | 50.0 | 3.33e-01 | 100.0% | 34.0% |
| 3710645 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 45.0 | 2.51e-01 | 79.4% | 8.2% |
| 3212072 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.59 | 42.0 | 2.61e-01 | 76.2% | 26.1% |
| 4936127 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 41.0 | 3.93e-01 | 76.2% | 100.0% |
| 4441223 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.53 | 43.0 | 3.29e-01 | 88.9% | 62.7% |
| 4493573 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.53 | 43.0 | 3.01e-01 | 88.9% | 53.5% |
| 3908432 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 42.0 | 2.60e-01 | 88.9% | 61.0% |
| 1504755 | 223.3.1.8 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.52 | 33.0 | 3.92e-01 | 73.0% | 100.0% |
| 4936469 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.51 | 42.0 | 2.71e-01 | 93.7% | 19.6% |