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MW749009.1__QXN70870.1__DARTUKUTA_16__00016

Bact-Vir

MW749009.1__QXN70870.1__DARTUKUTA_16__00016

Identity

Accession:
MW749009 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-92
PDB
D2 high residues 98-180
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 24.0 3.60e-05 97.6% 37.1%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.68 41.0 3.64e-01 83.1% 41.9%
6ksrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 57.0 4.58e-01 95.2% 83.7%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 50.0 4.83e-01 91.6% 72.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.62 36.0 3.74e-01 86.7% 60.0%
1kczA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 51.0 4.11e-01 91.6% 96.3%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 35.0 3.72e-01 79.5% 64.8%
2zgyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 53.0 4.14e-01 97.6% 75.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.59 43.0 3.90e-01 97.6% 57.3%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 38.0 3.29e-01 85.5% 40.4%
4iykA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 4.35e-01 90.4% 92.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 35.0 3.82e-01 80.7% 73.1%
3q45A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 50.0 4.43e-01 100.0% 74.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 34.0 3.14e-01 90.4% 44.0%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 51.0 4.56e-01 100.0% 81.0%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 47.0 4.08e-01 100.0% 60.0%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 46.0 4.37e-01 88.0% 92.9%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 37.0 3.58e-01 96.4% 59.8%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 34.0 3.02e-01 75.9% 42.4%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 42.0 3.72e-01 83.1% 88.2%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 45.0 4.07e-01 100.0% 64.3%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 46.0 4.55e-01 94.0% 94.4%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.18e-01 75.9% 94.4%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.54 31.0 3.38e-01 100.0% 67.1%
2pgwA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 48.0 3.98e-01 100.0% 64.7%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.85e-01 90.4% 81.2%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 3.71e-01 94.0% 91.9%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 31.0 2.95e-01 98.8% 45.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 26.0 2.89e-01 77.1% 56.2%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.37e-01 95.2% 49.6%
3mdqA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.52 42.0 3.26e-01 89.2% 71.4%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 46.0 4.22e-01 97.6% 80.4%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 35.0 3.32e-01 97.6% 55.1%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 45.0 4.09e-01 100.0% 80.3%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 3.14e-01 78.3% 95.9%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.93e-01 88.0% 86.6%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.49e-01 88.0% 60.3%
4af1A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.51 42.0 3.73e-01 94.0% 78.6%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 44.0 3.31e-01 100.0% 45.2%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 3.13e-01 85.5% 50.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060852 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.82 45.0 5.87e-01 84.3% 100.0%
5038003 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.77 45.0 5.53e-01 84.3% 96.0%
3633556 2485.2.1.0 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.75 62.0 4.99e-01 89.2% 89.7%
5062942 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.75 44.0 5.25e-01 88.0% 89.1%
3619467 220.1.1.84 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.73 40.0 3.61e-01 85.5% 40.9%
1877618 330.15.1.1 a+b two layers › dsRBD-like › VtrA protein periplasmic domain › VtrA protein periplasmic domain › VtrA_C 0.72 44.0 4.30e-01 79.5% 56.7%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 39.0 3.86e-01 83.1% 50.0%
3164555 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 42.0 3.48e-01 85.5% 34.0%
3924597 330.16.1.0 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.67 43.0 4.70e-01 88.0% 78.6%
5044391 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 32.0 3.96e-01 95.2% 74.0%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 48.0 4.43e-01 90.4% 60.0%
5041541 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 35.0 3.48e-01 75.9% 48.9%
3575385 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 35.0 3.34e-01 72.3% 45.0%
3629974 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.64 35.0 3.34e-01 72.3% 45.0%
3224246 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 37.0 3.50e-01 88.0% 46.2%
3574409 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 44.0 4.29e-01 92.8% 66.7%
5044389 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.62 32.0 3.93e-01 91.6% 80.0%
3744503 2484.8.1.1 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.62 55.0 3.83e-01 100.0% 60.7%
5051694 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.62 51.0 4.67e-01 88.0% 81.8%
4085772 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 36.0 3.81e-01 79.5% 64.0%
3943796 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 35.0 3.63e-01 80.7% 58.7%
4948723 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 35.0 4.41e-01 80.7% 100.0%
4606688 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 36.0 3.81e-01 80.7% 65.3%
4289288 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.60 49.0 4.19e-01 88.0% 56.2%
5078248 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 35.0 3.80e-01 79.5% 68.6%
3865191 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.60 37.0 3.38e-01 86.7% 46.4%
4983389 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 36.0 3.97e-01 80.7% 75.4%
419 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 36.0 3.73e-01 80.7% 64.5%
5039446 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.60 53.0 4.37e-01 95.2% 64.3%
4880118 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 35.0 3.80e-01 80.7% 70.0%
4380962 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 35.0 3.28e-01 80.7% 46.7%
4594302 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 35.0 3.17e-01 80.7% 42.6%
4978331 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 40.0 4.30e-01 94.0% 84.3%
5044392 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 33.0 3.92e-01 88.0% 83.6%
4443040 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 35.0 3.24e-01 80.7% 47.1%
3930399 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.57 41.0 3.87e-01 98.8% 62.6%
3496967 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.27e-01 89.2% 40.7%
3957000 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 45.0 2.86e-01 89.2% 94.9%
427301 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 45.0 4.13e-01 100.0% 67.3%
4969052 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 3.15e-01 95.2% 39.0%
4218488 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 27.0 2.80e-01 71.1% 45.0%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 28.0 3.19e-01 91.6% 65.0%
5015845 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.54 42.0 3.44e-01 85.5% 86.7%
3275512 2484.8.1.1 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.53 47.0 3.29e-01 100.0% 58.2%
4963350 220.1.1.323 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7115 0.53 38.0 3.57e-01 75.9% 62.0%
3519594 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.53 46.0 3.74e-01 96.4% 60.6%
4985980 2484.1.1.21 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.53 42.0 3.17e-01 92.8% 54.2%
4980468 2484.1.1.338 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family10 0.52 44.0 3.81e-01 94.0% 72.3%
4200272 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.52 40.0 3.95e-01 83.1% 90.0%
160941 330.1.1.19 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.52 42.0 3.69e-01 89.2% 60.5%
5071984 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 3.12e-01 81.9% 44.3%
3716442 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.89e-01 98.8% 96.0%
3644584 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 37.0 3.15e-01 100.0% 45.0%
3953894 7579.1.1.41 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase_PHB 0.51 41.0 3.03e-01 94.0% 95.4%
4079710 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.50 45.0 3.67e-01 100.0% 70.3%
D3 high residues 208-252
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o0uA02 3.40.50.10180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycerate kinase, MOFRL-like N-terminal domain 0.68 58.0 3.73e-01 100.0% 41.9%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.29e-01 100.0% 95.6%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.59 46.0 4.03e-01 100.0% 74.1%
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.59 46.0 3.41e-01 100.0% 37.3%
3hsqA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.58 44.0 4.10e-01 100.0% 63.2%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 3.40e-01 100.0% 94.7%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 44.0 3.27e-01 100.0% 69.8%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.27e-01 100.0% 95.8%
5x2bD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 2.63e-01 86.7% 51.1%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.50 35.0 2.58e-01 75.6% 23.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1883360 1101.1.1.1 alpha bundles › Uncharacterized protein LPG2271 › Uncharacterized protein LPG2271 › Uncharacterized protein LPG2271 › DUF5638 0.69 57.0 4.47e-01 100.0% 54.2%
4073499 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 48.0 4.90e-01 100.0% 95.0%
4999606 2006.1.4.50 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.65 53.0 4.02e-01 100.0% 48.0%
3617454 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.65 50.0 4.92e-01 100.0% 80.0%
4033611 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.65 50.0 5.06e-01 97.8% 95.6%
3515964 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.64 52.0 4.11e-01 100.0% 43.3%
4051059 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.63 50.0 4.76e-01 100.0% 74.5%
3319321 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.62 48.0 4.81e-01 100.0% 97.8%
3507069 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.61 49.0 3.69e-01 100.0% 33.8%
4470799 3265.1.1.1 alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st 0.55 42.0 3.97e-01 100.0% 81.5%
4370284 2004.1.1.226 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.55 45.0 2.87e-01 100.0% 16.4%