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MW787012.1__QVW28919.1__X__00130

Bact-Vir

MW787012.1__QVW28919.1__X__00130

Identity

Accession:
MW787012 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-59
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 58.0 5.42e-01 100.0% 68.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.40e-01 100.0% 69.7%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 49.0 3.98e-01 100.0% 38.5%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 46.0 4.04e-01 100.0% 46.3%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.66e-01 98.2% 91.8%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 42.0 3.38e-01 100.0% 31.7%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.69 40.0 3.55e-01 100.0% 39.7%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.68 40.0 2.36e-01 100.0% 6.6%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.54e-01 100.0% 86.2%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.11e-01 100.0% 79.0%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 43.0 2.86e-01 100.0% 17.1%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 47.0 3.73e-01 100.0% 39.3%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.63 45.0 3.33e-01 100.0% 30.8%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 48.0 3.51e-01 100.0% 30.2%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 50.0 3.95e-01 100.0% 42.7%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.62 43.0 2.81e-01 74.5% 37.0%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.62 42.0 4.53e-01 100.0% 87.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.71e-01 100.0% 65.1%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 5.17e-01 100.0% 85.3%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 49.0 3.72e-01 100.0% 37.0%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 34.0 2.99e-01 100.0% 34.9%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 48.0 3.53e-01 100.0% 31.8%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.67e-01 100.0% 44.9%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 47.0 3.33e-01 100.0% 26.7%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.59 48.0 3.74e-01 100.0% 41.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.52e-01 100.0% 85.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 47.0 3.75e-01 100.0% 44.1%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.78e-01 100.0% 49.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 51.0 3.48e-01 100.0% 34.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 42.0 3.99e-01 100.0% 65.8%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 46.0 3.88e-01 100.0% 53.1%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 40.0 3.00e-01 100.0% 28.4%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 46.0 3.49e-01 100.0% 38.2%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.45e-01 100.0% 44.1%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 49.0 3.82e-01 100.0% 76.7%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 46.0 3.54e-01 100.0% 40.7%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.15e-01 100.0% 29.2%
3rhaA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 2.72e-01 100.0% 19.6%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 39.0 3.36e-01 78.2% 86.5%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 44.0 3.60e-01 100.0% 46.8%
5w5yB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.54 38.0 2.95e-01 78.2% 65.3%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 47.0 3.82e-01 100.0% 51.4%
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.53 40.0 4.09e-01 100.0% 83.6%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 44.0 3.46e-01 100.0% 44.0%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 45.0 3.60e-01 100.0% 49.6%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 46.0 3.36e-01 100.0% 55.2%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 44.0 3.58e-01 100.0% 79.5%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.39e-01 100.0% 46.2%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 36.0 2.63e-01 90.9% 24.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 46.0 3.24e-01 100.0% 45.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 3.61e-01 100.0% 65.7%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 3.61e-01 100.0% 55.8%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 40.0 3.35e-01 94.5% 48.5%
1alo006 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 37.0 2.95e-01 81.8% 73.0%
4uejA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 36.0 2.59e-01 80.0% 38.0%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.50 41.0 3.53e-01 100.0% 55.1%
1gg3A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 44.0 3.96e-01 100.0% 93.6%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 43.0 3.12e-01 100.0% 69.9%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3725727 3792.1.1.0 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.84 49.0 4.12e-01 100.0% 37.6%
3785832 3792.1.1.2 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.84 48.0 4.02e-01 100.0% 35.6%
3742309 3792.1.1.2 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.83 48.0 4.16e-01 100.0% 40.0%
3941093 3792.1.1.0 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.81 47.0 3.84e-01 100.0% 33.7%
4064436 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.79 46.0 3.61e-01 100.0% 29.1%
4089543 304.24.1.21 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.79 46.0 3.05e-01 100.0% 16.0%
5050786 4027.1.1.0 beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.79 49.0 5.35e-01 100.0% 77.8%
3972526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.99e-01 100.0% 87.1%
4031509 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 5.65e-01 100.0% 78.3%
3590658 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.80e-01 100.0% 88.6%
3695902 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.72 45.0 3.04e-01 100.0% 18.5%
3607227 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.71 56.0 5.86e-01 100.0% 96.0%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.17e-01 100.0% 70.8%
4656461 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 54.0 5.27e-01 100.0% 76.7%
5027750 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 55.0 5.57e-01 100.0% 87.3%
4383356 3615.1.1.49 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Dynamin_N 0.69 47.0 2.63e-01 100.0% 6.0%
3549615 10.32.1.221 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25900 0.67 49.0 3.45e-01 100.0% 25.3%
5010420 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.66 49.0 3.93e-01 100.0% 40.7%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 44.0 4.68e-01 100.0% 86.7%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 4.92e-01 100.0% 73.8%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 43.0 4.63e-01 100.0% 86.7%
3988748 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.63 46.0 3.34e-01 100.0% 29.0%
3603549 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.91e-01 100.0% 71.8%
4647537 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 47.0 3.79e-01 100.0% 42.7%
3596155 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 3.36e-01 74.5% 93.9%
3289401 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 45.0 3.46e-01 100.0% 34.6%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 43.0 4.44e-01 100.0% 86.0%
3223606 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.59 44.0 2.84e-01 83.6% 97.3%
3621133 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 50.0 3.18e-01 100.0% 94.9%
4355655 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 49.0 3.90e-01 100.0% 94.4%
3426874 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.58 50.0 3.82e-01 100.0% 95.6%
4937342 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 49.0 3.90e-01 100.0% 46.5%
3352566 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.57 49.0 3.39e-01 100.0% 94.1%
3888324 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.80e-01 100.0% 47.6%
5055413 10.20.1.0 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.57 44.0 3.33e-01 100.0% 35.4%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 43.0 4.32e-01 100.0% 84.7%
3325330 3346.1.1.5 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.56 43.0 2.99e-01 100.0% 24.1%
3784003 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.56 48.0 3.57e-01 100.0% 51.6%
4942796 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 47.0 3.80e-01 100.0% 47.3%
5036976 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.69e-01 100.0% 47.5%
3615237 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.54 47.0 2.84e-01 100.0% 15.0%
4063927 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.54 46.0 3.21e-01 100.0% 38.9%
4941845 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 44.0 4.49e-01 100.0% 98.1%
4133554 304.24.1.21 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.53 46.0 3.18e-01 100.0% 38.9%
3273123 3578.1.1.0 beta sandwiches › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE 0.53 47.0 3.63e-01 100.0% 50.0%
3278518 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 37.0 2.67e-01 74.5% 29.7%
3273875 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.53 46.0 3.75e-01 100.0% 99.0%
150973 4967.1.1.5 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_3 0.53 43.0 3.03e-01 100.0% 52.3%
4082091 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.52 44.0 3.59e-01 100.0% 56.5%
3729046 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 36.0 2.16e-01 74.5% 16.6%
3502540 1.1.1.14 beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.51 44.0 3.79e-01 100.0% 76.7%
3523136 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.51 40.0 2.58e-01 92.7% 43.8%
3614040 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 44.0 4.10e-01 100.0% 88.6%
3790561 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.50 39.0 2.62e-01 92.7% 52.0%
3222254 304.9.1.40 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › BRAP2 0.50 43.0 3.43e-01 100.0% 65.5%