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MW791312.1__QVD49434.1__X__00030

Bact-Vir

MW791312.1__QVD49434.1__X__00030

Identity

Accession:
MW791312 ↗
Kingdom:
phage

Quality

65.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Questintvirus› Lactococcus_phage_Nocturne116

TaxID: 2831179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-51
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.71 64.0 5.31e-01 100.0% 74.7%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.63 44.0 2.88e-01 74.5% 62.2%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.60 43.0 2.82e-01 80.9% 72.7%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.31e-01 72.3% 45.6%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.24e-01 70.2% 79.8%
1kgqA01 1.10.166.10 Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain 0.57 43.0 3.78e-01 80.9% 77.1%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.54 36.0 3.49e-01 72.3% 56.7%
1y6uA01 3.90.105.50 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › 0.52 37.0 3.68e-01 100.0% 73.5%
2plyB01 1.10.10.2770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 42.0 3.18e-01 97.9% 74.6%
1rmdA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 36.0 3.12e-01 100.0% 41.9%
3lqyA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.52 35.0 2.41e-01 72.3% 29.4%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.07e-01 91.5% 39.5%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.07e-01 100.0% 42.2%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.25e-01 89.4% 49.5%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.50 38.0 3.29e-01 93.6% 85.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947868 2484.1.1.87 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C 0.70 52.0 3.65e-01 100.0% 24.2%
3886750 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.69 63.0 5.69e-01 100.0% 93.7%
3798336 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.63 53.0 4.68e-01 100.0% 64.3%
4156870 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.62 44.0 3.46e-01 74.5% 86.3%
4981233 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.56 42.0 2.63e-01 85.1% 30.9%
3396475 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 42.0 3.67e-01 87.2% 78.8%
5009952 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.56e-01 70.2% 98.3%
3780237 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.55 43.0 3.05e-01 100.0% 48.6%
2106047 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.54 46.0 3.31e-01 100.0% 74.0%
3881967 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 40.0 3.59e-01 100.0% 55.0%
4196780 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 36.0 3.90e-01 100.0% 97.1%
4509560 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.53 44.0 2.73e-01 93.6% 78.2%
3976992 2002.1.1.300 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase 0.52 42.0 2.61e-01 91.5% 78.0%
4251290 101.1.2.573 ↗ alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel 0.52 40.0 3.19e-01 87.2% 50.0%
4984241 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.51 42.0 2.61e-01 93.6% 80.0%
3508184 101.1.2.103 ↗ alpha arrays › HTH › HTH › winged helix domain › SelB-wing_2 0.51 42.0 3.62e-01 91.5% 76.0%
5028127 101.1.2.97 ↗ alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.51 41.0 3.50e-01 91.5% 62.5%
5039517 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.55e-01 85.1% 68.6%
4668668 101.1.2.170 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_51 0.51 37.0 2.26e-01 76.6% 45.5%
5074035 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.75e-01 89.4% 71.7%