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MW791312.1__QVD49455.1__X__00051

Bact-Vir

MW791312.1__QVD49455.1__X__00051

Identity

Accession:
MW791312 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Questintvirus› Lactococcus_phage_Nocturne116

TaxID: 2831179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-53
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2idaA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.76 59.0 4.87e-01 85.7% 67.0%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 56.0 4.49e-01 85.7% 55.6%
2a90A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.64 54.0 4.39e-01 98.0% 78.6%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.64 52.0 4.28e-01 91.8% 57.6%
4dw8A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.64 46.0 3.29e-01 79.6% 35.0%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.64 51.0 3.24e-01 89.8% 48.8%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 46.0 3.98e-01 79.6% 57.1%
2o0aA00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.62 53.0 3.34e-01 98.0% 96.7%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.08e-01 95.9% 29.6%
1q90C00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 42.0 3.25e-01 85.7% 60.3%
1l6rA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 47.0 3.35e-01 100.0% 36.3%
1m0wA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.52 47.0 3.39e-01 100.0% 65.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3422037 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.75 60.0 5.00e-01 87.8% 64.7%
3995519 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.74 58.0 4.57e-01 85.7% 55.0%
3612662 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.70 57.0 4.17e-01 89.8% 41.5%
5059258 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.69 60.0 3.83e-01 93.9% 30.0%
3619550 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.69 57.0 4.32e-01 91.8% 55.7%
3906945 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.69 56.0 4.43e-01 89.8% 56.0%
3258060 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.67 50.0 4.55e-01 85.7% 58.6%
4930486 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.63 46.0 3.82e-01 83.7% 59.0%
4028249 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.62 42.0 4.14e-01 71.4% 68.5%
3783751 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.61 49.0 2.94e-01 87.8% 14.8%
5081096 2004.1.1.99 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N 0.60 50.0 3.35e-01 95.9% 39.5%
3404754 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.59 45.0 3.39e-01 91.8% 59.3%
3171207 3016.1.1.7 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Cys_Met_Meta_PP 0.59 51.0 3.47e-01 100.0% 76.8%
3981391 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.58 44.0 3.12e-01 83.7% 34.4%
1033005 3016.1.1.12 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Alliinase_C 0.57 50.0 3.83e-01 100.0% 72.2%
3446290 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.57 49.0 3.68e-01 100.0% 54.6%
3258074 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 41.0 3.90e-01 85.7% 69.2%
4200396 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.56 43.0 3.14e-01 91.8% 38.8%
4954543 2004.1.1.117 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 0.56 46.0 3.02e-01 98.0% 35.8%
5079019 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.54 43.0 2.83e-01 91.8% 23.5%
1408245 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.52 41.0 3.25e-01 91.8% 42.5%
4973737 2006.1.1.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.50 38.0 2.56e-01 85.7% 54.2%