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MW794149.1__QVV99085.1__2017DRC87_0475__00094

Bact-Vir

MW794149.1__QVV99085.1__2017DRC87_0475__00094

Identity

Accession:
MW794149 ↗
Kingdom:
phage

Quality

73.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-53
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 48.0 2.85e-01 77.1% 76.2%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.68 56.0 4.93e-01 93.8% 78.1%
6ilsA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.67 48.0 2.98e-01 79.2% 13.1%
3pl2A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.67 47.0 3.00e-01 79.2% 14.0%
1a2fA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.65 45.0 3.33e-01 81.2% 28.9%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.64 52.0 4.20e-01 89.6% 65.2%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 45.0 4.03e-01 93.8% 50.7%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 46.0 4.18e-01 100.0% 56.5%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.63 43.0 3.23e-01 77.1% 26.7%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 40.0 4.05e-01 93.8% 64.0%
3a2kA03 3.30.465.60 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 49.0 4.31e-01 100.0% 94.2%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.62 51.0 3.37e-01 93.8% 84.9%
1tyyA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 44.0 2.74e-01 79.2% 15.8%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 51.0 4.01e-01 97.9% 92.5%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 47.0 4.20e-01 89.6% 94.4%
3kd6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 43.0 2.70e-01 81.2% 12.7%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 48.0 4.16e-01 100.0% 89.7%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.58 48.0 3.56e-01 100.0% 84.8%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 45.0 4.01e-01 91.7% 89.6%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.34e-01 89.6% 33.8%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.27e-01 79.2% 59.1%
3l4gC03 1.10.10.2330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 44.0 4.29e-01 85.4% 75.5%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.57 41.0 3.30e-01 81.2% 38.1%
2dcnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 44.0 2.73e-01 87.5% 14.9%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.57 46.0 3.49e-01 89.6% 81.7%
5m0nA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 42.0 2.57e-01 91.7% 39.5%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.54e-01 77.1% 94.7%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.56 40.0 3.68e-01 81.2% 76.1%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.56 46.0 3.47e-01 95.8% 36.2%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 42.0 2.74e-01 83.3% 80.5%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 45.0 3.52e-01 100.0% 52.1%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.50e-01 87.5% 90.1%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 44.0 3.38e-01 91.7% 48.7%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.54 40.0 3.03e-01 81.2% 47.1%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.53 40.0 2.54e-01 87.5% 84.2%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 41.0 3.08e-01 87.5% 90.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.53 38.0 3.84e-01 91.7% 75.0%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.53 39.0 3.38e-01 81.2% 87.3%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.83e-01 100.0% 88.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 40.0 3.24e-01 93.8% 45.0%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 2.73e-01 81.2% 38.0%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.51 36.0 2.98e-01 75.0% 79.1%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 36.0 3.60e-01 93.8% 73.6%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 38.0 3.18e-01 87.5% 65.3%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.51 37.0 3.31e-01 79.2% 83.1%
3psqB00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.51 42.0 2.96e-01 100.0% 62.6%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 41.0 3.05e-01 91.7% 62.7%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.51e-01 87.5% 72.0%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.06e-01 100.0% 87.2%
3orgA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 39.0 3.07e-01 93.8% 92.1%
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.50 37.0 3.44e-01 100.0% 62.3%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.37e-01 89.6% 82.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3711668 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.70 59.0 4.93e-01 100.0% 58.9%
3598918 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 49.0 3.92e-01 81.2% 52.9%
3760738 4357.1.1.9 beta barrels › WWE domain › WWE domain › WWE domain › WWE, WWE_3 0.67 54.0 3.90e-01 93.8% 36.9%
4172732 7527.1.1.2 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.65 46.0 2.71e-01 75.0% 49.0%
4013485 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 46.0 3.15e-01 81.2% 20.0%
5042330 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.64 53.0 4.72e-01 93.8% 75.7%
3818050 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.64 44.0 3.89e-01 77.1% 58.7%
4590496 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.62 45.0 2.61e-01 81.2% 72.5%
3229983 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.62 54.0 3.47e-01 100.0% 38.2%
4922053 5093.1.1.4 a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly, Fibritin_C 0.62 51.0 3.05e-01 97.9% 37.0%
5012108 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 44.0 2.77e-01 83.3% 12.5%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.61 33.0 2.52e-01 81.2% 21.7%
4078587 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.61 49.0 3.00e-01 93.8% 84.0%
4945161 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.60 47.0 3.22e-01 89.6% 33.7%
139132 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 48.0 4.14e-01 100.0% 88.6%
3552839 11.1.1.795 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA 0.59 45.0 3.54e-01 85.4% 50.0%
3202639 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.59 43.0 2.50e-01 81.2% 70.9%
4025070 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.59 47.0 3.57e-01 91.7% 70.8%
5048954 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.22e-01 79.2% 64.3%
3930245 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.57 48.0 3.74e-01 95.8% 80.0%
3426676 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 48.0 2.92e-01 100.0% 54.4%
5010522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.82e-01 93.8% 91.0%
4937983 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.56 42.0 3.27e-01 81.2% 64.8%
4030596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.30e-01 75.0% 83.5%
5079941 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.50e-01 77.1% 88.0%
3290063 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 42.0 3.24e-01 87.5% 93.6%
3253833 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.64e-01 79.2% 98.6%
4945998 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.89e-01 91.7% 93.3%
5073006 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.54 43.0 3.19e-01 97.9% 81.2%
3981710 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.54 45.0 2.96e-01 100.0% 42.4%
4120506 243.11.1.4 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.54 43.0 3.62e-01 87.5% 91.3%
4067342 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.54 44.0 2.74e-01 100.0% 54.2%
5024071 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.46e-01 100.0% 47.0%
4400545 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.53 38.0 3.71e-01 75.0% 67.9%
3942501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.14e-01 75.0% 83.3%
4666952 2007.1.18.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 0.53 39.0 2.52e-01 83.3% 25.0%
4976589 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.53 42.0 3.58e-01 100.0% 55.8%
3982048 327.16.1.5 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › type_II_gspD_N0 0.53 34.0 3.41e-01 70.8% 64.0%
4466712 2007.1.18.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) › MTD 0.53 43.0 2.65e-01 89.6% 15.9%
5078972 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 41.0 3.65e-01 100.0% 62.4%
3286336 149.1.1.0 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.52 40.0 2.44e-01 93.8% 63.1%
3576508 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.52 44.0 3.95e-01 100.0% 85.7%
4995778 101.1.2.368 alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.52 41.0 3.55e-01 93.8% 90.6%
5050094 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 43.0 3.02e-01 97.9% 30.0%
2354 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.52 35.0 3.58e-01 72.9% 97.8%
3968526 2.1.1.145 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2835 0.52 42.0 3.73e-01 93.8% 90.4%
3924514 109.4.1.83 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.51 36.0 2.39e-01 83.3% 20.0%
3284376 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.51 36.0 3.30e-01 75.0% 89.2%
3272557 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 38.0 2.84e-01 100.0% 77.8%
4936469 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.51 38.0 2.45e-01 89.6% 75.7%
3592627 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.51 41.0 2.66e-01 93.8% 90.4%
3718200 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 37.0 2.82e-01 81.2% 36.8%
3255991 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.50 41.0 2.57e-01 93.8% 84.5%