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MW794150.1__QVV99302.1__2015DhaA_0420__00084

Bact-Vir

MW794150.1__QVV99302.1__2015DhaA_0420__00084

Identity

Accession:
MW794150 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mohonavirus› Vibrio_phage_ICP1

TaxID: 979525

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-85_133-155_183-226
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF09615.16 best Cas_Csy3 32.4 9.10e-08 65.2% 26.8%
PF09615.16 Cas_Csy3 35.3 1.20e-08 49.3% 19.8%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 28.0 3.86e-01 98.6% 98.5%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 28.0 3.25e-01 77.5% 65.0%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.56e-01 79.0% 72.8%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 32.0 3.82e-01 82.6% 86.6%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.53 42.0 3.06e-01 86.2% 83.5%
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.46e-01 77.5% 72.8%
1kv3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.43e-01 77.5% 71.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2593098 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.96 93.0 6.66e-01 100.0% 71.5%
4878473 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.95 91.0 6.66e-01 100.0% 71.0%
4857347 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.93 91.0 6.75e-01 100.0% 70.1%
4883268 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.90 86.0 6.19e-01 100.0% 71.2%
2580652 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.89 86.0 6.17e-01 100.0% 70.5%
5004441 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 32.0 4.21e-01 72.5% 96.2%
3988650 3370.1.1.1 ↗ beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 › Lactococcin_972 0.57 29.0 3.81e-01 98.6% 90.7%
184770 3370.1.1.1 ↗ beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 › Lactococcin_972 0.56 28.0 3.86e-01 98.6% 98.5%
3906149 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 31.0 3.46e-01 77.5% 75.5%
D2 medium residues 86-132_156-182_227-301
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF09615.16 best Cas_Csy3 94.0 1.60e-26 60.4% 24.1%
PF09615.16 Cas_Csy3 26.0 8.10e-06 40.3% 13.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4857347 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.99 97.0 7.35e-01 100.0% 71.5%
2580652 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.88 85.0 6.24e-01 100.0% 71.6%
3977749 235.1.1.5 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly 0.54 41.0 3.97e-01 92.6% 70.9%
4505114 6130.1.1.0 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain 0.53 23.0 3.35e-01 88.6% 90.8%