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MW805361.1__URC15216.1__GD1_92__00092
Bact-VirMW805361.1__URC15216.1__GD1_92__00092
Identity
- Accession:
- MW805361 ↗
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-189
Domain cluster:
rep: SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00254__D3-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04607.24 best | RelA_SpoT | 28.3 | 2.50e-06 | 62.8% | 78.8% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ztbB01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.83 | 76.0 | 7.37e-01 | 95.3% | 96.3% |
| 6fgjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.80 | 70.0 | 7.00e-01 | 91.2% | 98.0% |
| 2id1A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.77 | 47.0 | 5.53e-01 | 81.1% | 86.5% |
| 1vj7B02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.77 | 58.0 | 6.42e-01 | 91.9% | 97.5% |
| 4wcwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.77 | 49.0 | 5.55e-01 | 84.5% | 84.7% |
| 2o5aA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.77 | 46.0 | 5.46e-01 | 83.1% | 86.3% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.74 | 45.0 | 5.19e-01 | 81.1% | 83.3% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.72 | 60.0 | 6.25e-01 | 92.6% | 94.8% |
| 6u8yK01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.71 | 41.0 | 4.08e-01 | 79.7% | 54.5% |
| 7q5yB01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.69 | 41.0 | 4.53e-01 | 82.4% | 72.5% |
| 1v43A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 22.0 | 3.40e-01 | 77.0% | 70.3% |
| 3wfoA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.65 | 41.0 | 4.01e-01 | 81.8% | 58.0% |
| 5hr9A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.65 | 46.0 | 5.31e-01 | 95.3% | 100.0% |
| 4alzA01 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.65 | 30.0 | 4.19e-01 | 79.1% | 96.8% |
| 3hj4A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.65 | 48.0 | 5.10e-01 | 85.1% | 86.3% |
| 4zrlA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.65 | 48.0 | 5.31e-01 | 89.2% | 97.4% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.63 | 46.0 | 5.18e-01 | 85.1% | 98.2% |
| 2r5vB02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 42.0 | 3.84e-01 | 70.9% | 87.7% |
| 7z7vC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.60 | 38.0 | 4.04e-01 | 78.4% | 73.2% |
| 4s3nA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 51.0 | 5.14e-01 | 92.6% | 95.2% |
| 2rrlA01 | 3.30.750.140 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.57 | 30.0 | 3.35e-01 | 80.4% | 61.7% |
| 1gxsB02 | 3.40.50.11320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 29.0 | 3.44e-01 | 82.4% | 69.4% |
| 4abyD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 41.0 | 3.17e-01 | 73.6% | 35.4% |
| 1sqiA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 40.0 | 3.84e-01 | 72.3% | 83.8% |
| 1sp8C01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 39.0 | 3.73e-01 | 72.3% | 84.6% |
| 2r5vA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 39.0 | 3.90e-01 | 72.3% | 84.7% |
| 4ud8B01 | 3.30.43.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | 0.54 | 38.0 | 4.40e-01 | 78.4% | 99.1% |
| 2x3fA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.54 | 34.0 | 3.97e-01 | 86.5% | 92.0% |
| 1ufvA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.53 | 33.0 | 3.87e-01 | 84.5% | 92.9% |
| 1r9cA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 37.0 | 4.00e-01 | 84.5% | 86.4% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 36.0 | 3.78e-01 | 72.3% | 100.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928888 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.85 | 70.0 | 6.35e-01 | 90.5% | 66.3% |
| 2576225 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.85 | 68.0 | 6.12e-01 | 91.2% | 63.4% |
| 4968492 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.83 | 74.0 | 5.02e-01 | 92.6% | 31.0% |
| 4832530 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.82 | 62.0 | 6.30e-01 | 76.4% | 81.1% |
| 4043620 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.81 | 67.0 | 6.24e-01 | 90.5% | 70.6% |
| 3372556 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.81 | 71.0 | 6.17e-01 | 91.2% | 90.5% |
| 3670948 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.80 | 69.0 | 6.21e-01 | 90.5% | 75.9% |
| 3955935 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.80 | 72.0 | 6.22e-01 | 95.3% | 65.9% |
| 3367594 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.78 | 64.0 | 5.98e-01 | 90.5% | 70.6% |
| 3970660 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.78 | 47.0 | 5.32e-01 | 81.1% | 78.3% |
| 3589006 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.77 | 64.0 | 5.77e-01 | 90.5% | 65.6% |
| 3949523 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.77 | 49.0 | 5.47e-01 | 86.5% | 80.0% |
| 3947896 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.77 | 47.0 | 5.50e-01 | 81.1% | 85.7% |
| 6824 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.77 | 63.0 | 6.39e-01 | 90.5% | 87.6% |
| 6830 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.77 | 46.0 | 5.32e-01 | 83.1% | 81.5% |
| 3668029 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.77 | 66.0 | 5.79e-01 | 90.5% | 71.0% |
| 3957461 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.76 | 52.0 | 5.67e-01 | 84.5% | 82.4% |
| 3832774 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.76 | 65.0 | 6.37e-01 | 90.5% | 92.5% |
| 6829 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.76 | 47.0 | 5.18e-01 | 83.1% | 75.8% |
| 3385505 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.76 | 45.0 | 5.29e-01 | 80.4% | 82.9% |
| 4196711 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.76 | 62.0 | 5.83e-01 | 90.5% | 71.1% |
| 3838458 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.75 | 63.0 | 5.84e-01 | 90.5% | 72.8% |
| 3259379 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.74 | 46.0 | 5.00e-01 | 100.0% | 72.8% |
| 4809709 | 211.1.1.33 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › RsfS | 0.74 | 43.0 | 4.90e-01 | 79.1% | 74.8% |
| 5005089 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.73 | 40.0 | 4.81e-01 | 83.8% | 79.0% |
| 4087573 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.73 | 33.0 | 3.13e-01 | 84.5% | 36.5% |
| 3213519 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.73 | 48.0 | 5.15e-01 | 83.1% | 76.2% |
| 4821392 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.72 | 52.0 | 5.74e-01 | 80.4% | 90.8% |
| 4096725 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.72 | 46.0 | 5.15e-01 | 95.3% | 81.7% |
| 3318424 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.70 | 44.0 | 4.74e-01 | 99.3% | 72.3% |
| 3476874 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.69 | 44.0 | 4.90e-01 | 95.3% | 79.2% |
| 3721514 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 44.0 | 3.78e-01 | 83.8% | 42.2% |
| 3723794 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 43.0 | 3.71e-01 | 82.4% | 42.6% |
| 1952982 | 316.1.1.4 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2,DNA_pol_B_thumb | 0.65 | 47.0 | 4.39e-01 | 96.6% | 61.2% |
| 3453703 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.65 | 50.0 | 4.47e-01 | 96.6% | 59.3% |
| 3737563 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.61 | 49.0 | 4.84e-01 | 82.4% | 79.4% |
| 4969949 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 41.0 | 3.79e-01 | 81.8% | 53.3% |
| 5055016 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 43.0 | 3.84e-01 | 81.8% | 53.2% |
| 3991000 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.59 | 36.0 | 4.41e-01 | 100.0% | 97.8% |
| 3787126 | 316.1.1.19 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Tam41_Mmp37 | 0.58 | 43.0 | 4.17e-01 | 87.2% | 69.1% |
| 3605008 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.55 | 49.0 | 4.32e-01 | 93.9% | 73.4% |
| 3938710 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.54 | 39.0 | 2.21e-01 | 76.4% | 19.9% |
| 3381186 | 315.1.1.8 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › DUF3783 | 0.50 | 35.0 | 3.74e-01 | 81.8% | 83.2% |
| 4122519 | 316.1.1.48 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MdcG | 0.50 | 36.0 | 3.83e-01 | 73.0% | 89.6% |
D2
high
residues 190-239
Domain cluster:
representative
CATH (57)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hgtA00 | 3.40.50.12360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.81 | 66.0 | 4.08e-01 | 100.0% | 16.1% |
| 3pt1A02 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.79 | 63.0 | 4.68e-01 | 100.0% | 35.8% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.78 | 63.0 | 5.88e-01 | 100.0% | 72.1% |
| 4a4kA01 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.75 | 63.0 | 4.83e-01 | 100.0% | 41.6% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.72 | 60.0 | 4.72e-01 | 100.0% | 42.4% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.72 | 61.0 | 6.22e-01 | 100.0% | 95.9% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 61.0 | 5.11e-01 | 100.0% | 56.7% |
| 4im7A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.69 | 53.0 | 3.52e-01 | 86.0% | 29.8% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.68 | 59.0 | 5.51e-01 | 100.0% | 84.4% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 61.0 | 5.81e-01 | 100.0% | 91.4% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.68 | 61.0 | 4.81e-01 | 100.0% | 53.4% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 56.0 | 5.04e-01 | 90.0% | 100.0% |
| 2hz8A00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.68 | 60.0 | 4.57e-01 | 100.0% | 47.8% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 61.0 | 5.75e-01 | 100.0% | 89.8% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 60.0 | 5.12e-01 | 100.0% | 63.0% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 58.0 | 5.13e-01 | 100.0% | 66.2% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 61.0 | 4.69e-01 | 100.0% | 90.5% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 56.0 | 4.35e-01 | 100.0% | 43.9% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.66 | 54.0 | 4.84e-01 | 100.0% | 63.2% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 58.0 | 5.39e-01 | 98.0% | 76.9% |
| 2g2dA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.66 | 58.0 | 4.03e-01 | 100.0% | 33.1% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 57.0 | 5.09e-01 | 100.0% | 69.9% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.66 | 54.0 | 4.51e-01 | 100.0% | 52.9% |
| 3wd6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 56.0 | 4.26e-01 | 100.0% | 40.7% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.65 | 56.0 | 5.20e-01 | 100.0% | 78.5% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 55.0 | 4.87e-01 | 100.0% | 70.5% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.65 | 54.0 | 3.80e-01 | 100.0% | 90.7% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.65 | 51.0 | 4.38e-01 | 100.0% | 52.9% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 55.0 | 5.08e-01 | 100.0% | 92.6% |
| 3pyoY00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 54.0 | 5.05e-01 | 94.0% | 75.8% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.64 | 53.0 | 4.64e-01 | 100.0% | 74.4% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 55.0 | 4.44e-01 | 100.0% | 59.6% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.63 | 53.0 | 4.53e-01 | 100.0% | 64.4% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 53.0 | 4.71e-01 | 100.0% | 64.9% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.62 | 53.0 | 4.21e-01 | 96.0% | 64.1% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 51.0 | 4.20e-01 | 100.0% | 51.9% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 53.0 | 5.06e-01 | 100.0% | 100.0% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 52.0 | 4.87e-01 | 100.0% | 85.9% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.61 | 50.0 | 4.77e-01 | 100.0% | 79.7% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.60 | 49.0 | 4.52e-01 | 100.0% | 76.1% |
| 3qavA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 50.0 | 3.76e-01 | 100.0% | 37.1% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.60 | 48.0 | 2.99e-01 | 90.0% | 70.2% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.59 | 49.0 | 3.67e-01 | 100.0% | 34.3% |
| 1lujB01 | 1.10.10.490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT | 0.59 | 44.0 | 4.36e-01 | 88.0% | 79.2% |
| 3ns4A00 | 1.10.357.110 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus | 0.59 | 49.0 | 3.34e-01 | 100.0% | 24.9% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 4.05e-01 | 100.0% | 57.8% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 45.0 | 4.03e-01 | 100.0% | 100.0% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.58 | 47.0 | 4.19e-01 | 100.0% | 67.1% |
| 2btoA03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 45.0 | 4.41e-01 | 90.0% | 100.0% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 45.0 | 4.32e-01 | 100.0% | 81.0% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 47.0 | 3.78e-01 | 100.0% | 46.4% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.56 | 46.0 | 4.40e-01 | 100.0% | 82.0% |
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 48.0 | 4.30e-01 | 100.0% | 70.8% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.55 | 46.0 | 4.26e-01 | 100.0% | 100.0% |
| 7miqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 42.0 | 3.56e-01 | 100.0% | 60.9% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.53 | 42.0 | 3.59e-01 | 100.0% | 72.0% |
| 4aciA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 40.0 | 2.97e-01 | 100.0% | 29.5% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3803759 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.84 | 73.0 | 6.03e-01 | 100.0% | 56.7% |
| 4043561 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.76 | 60.0 | 4.65e-01 | 100.0% | 40.0% |
| 3350514 | 3922.1.1.145 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › KIF21A_4th | 0.74 | 65.0 | 4.54e-01 | 100.0% | 78.8% |
| 3592140 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.73 | 60.0 | 4.54e-01 | 100.0% | 38.5% |
| 3718035 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 58.0 | 5.37e-01 | 96.0% | 70.8% |
| 3250231 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.71 | 56.0 | 3.70e-01 | 100.0% | 20.5% |
| 4619538 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.71 | 55.0 | 4.27e-01 | 100.0% | 38.3% |
| 4942387 | 632.7.1.66 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › DUF2304 | 0.70 | 58.0 | 4.51e-01 | 100.0% | 42.7% |
| 3862724 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.70 | 58.0 | 4.59e-01 | 100.0% | 44.8% |
| 3940244 | 5001.1.1.35 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srsx | 0.69 | 58.0 | 3.64e-01 | 100.0% | 16.5% |
| 5083098 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 56.0 | 4.57e-01 | 100.0% | 47.0% |
| 3495283 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.68 | 58.0 | 4.37e-01 | 100.0% | 40.7% |
| 3222373 | 605.4.1.18 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF29357 | 0.68 | 58.0 | 4.88e-01 | 100.0% | 56.5% |
| 4015520 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.68 | 58.0 | 4.13e-01 | 100.0% | 30.9% |
| 4994115 | 192.10.1.15 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › EamA | 0.68 | 57.0 | 5.12e-01 | 100.0% | 67.1% |
| 3465588 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.68 | 60.0 | 4.69e-01 | 100.0% | 48.6% |
| 3181110 | 5086.1.1.110 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA | 0.67 | 59.0 | 4.80e-01 | 100.0% | 53.7% |
| 3204414 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.67 | 57.0 | 3.46e-01 | 100.0% | 13.7% |
| 4638458 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.67 | 59.0 | 5.39e-01 | 100.0% | 75.4% |
| 3899274 | 109.4.1.108 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CTNNBL | 0.67 | 56.0 | 3.18e-01 | 96.0% | 8.6% |
| 4000148 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.67 | 57.0 | 4.69e-01 | 100.0% | 53.7% |
| 4508314 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.66 | 56.0 | 5.26e-01 | 100.0% | 77.8% |
| 3593287 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.66 | 55.0 | 4.11e-01 | 100.0% | 36.2% |
| 3473769 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.66 | 54.0 | 3.56e-01 | 100.0% | 20.0% |
| 3478266 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.66 | 56.0 | 4.31e-01 | 100.0% | 42.7% |
| 3979725 | 3291.1.1.15 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2583 | 0.66 | 58.0 | 4.77e-01 | 100.0% | 61.1% |
| 4085389 | 4207.1.2.29 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med4 | 0.66 | 57.0 | 4.16e-01 | 100.0% | 35.2% |
| 3641527 | 192.8.1.353 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med10 | 0.66 | 57.0 | 4.91e-01 | 100.0% | 76.2% |
| 3601441 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 56.0 | 4.54e-01 | 100.0% | 58.0% |
| 5047567 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.65 | 56.0 | 3.79e-01 | 100.0% | 26.3% |
| 3010304 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.65 | 56.0 | 5.50e-01 | 100.0% | 94.5% |
| 3231728 | 5001.1.1.84 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz | 0.65 | 57.0 | 3.48e-01 | 100.0% | 16.2% |
| 4977416 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 56.0 | 3.60e-01 | 98.0% | 76.6% |
| 3646329 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.64 | 52.0 | 3.61e-01 | 100.0% | 25.5% |
| 3494616 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.64 | 52.0 | 4.57e-01 | 100.0% | 64.7% |
| 3847053 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.63 | 53.0 | 4.75e-01 | 100.0% | 72.0% |
| 3925268 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 53.0 | 4.34e-01 | 100.0% | 51.0% |
| 3210948 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.62 | 55.0 | 4.71e-01 | 100.0% | 63.7% |
| 3451334 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.62 | 52.0 | 4.57e-01 | 100.0% | 62.7% |
| 4058767 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.62 | 52.0 | 3.90e-01 | 100.0% | 37.1% |
| 3267148 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.62 | 52.0 | 4.16e-01 | 100.0% | 47.3% |
| 5052222 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.62 | 52.0 | 4.50e-01 | 100.0% | 60.0% |
| 4961031 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.62 | 53.0 | 4.81e-01 | 100.0% | 72.9% |
| 3611632 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.61 | 52.0 | 4.19e-01 | 100.0% | 49.0% |
| 1290191 | 159.1.3.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 › PRA-PH | 0.60 | 49.0 | 3.67e-01 | 100.0% | 33.1% |
| 5012157 | 605.1.1.354 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 | 0.59 | 50.0 | 4.30e-01 | 100.0% | 82.4% |
| 4406905 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.59 | 48.0 | 4.43e-01 | 100.0% | 72.9% |
| 3794775 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.58 | 47.0 | 4.44e-01 | 100.0% | 75.4% |
| 4447644 | 2004.1.1.514 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B | 0.54 | 41.0 | 2.59e-01 | 100.0% | 15.4% |