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MW805361.1__URC15220.1__GD1_96__00096

Bact-Vir

MW805361.1__URC15220.1__GD1_96__00096

Identity

Accession:
MW805361 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Paraglaciecola_Antarctic_GD_virus_1

TaxID: 2945130

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-70
PDB
Domain cluster: rep: MW824382.1__QZI90904.1__MYOV064v1_p0054__00054__D5-64
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gs8A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.72 54.0 4.19e-01 80.3% 65.7%
4nq0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 62.0 4.20e-01 100.0% 96.9%
4txiA03 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.69 43.0 3.70e-01 72.7% 39.8%
4u04A02 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.66 54.0 3.80e-01 93.9% 46.3%
1q16B03 1.10.3650.10 Mainly Alpha › Orthogonal Bundle › nitrate reductase domain fold › nitrate reductase domain like 0.65 40.0 3.78e-01 71.2% 51.9%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 45.0 4.35e-01 77.3% 82.7%
2aj4B03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.58 43.0 3.30e-01 80.3% 74.1%
4gywA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 46.0 3.97e-01 86.4% 81.9%
4eeiA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.57 43.0 4.16e-01 93.9% 73.1%
1zx3A01 1.10.287.1020 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like 0.54 47.0 4.33e-01 93.9% 76.5%
4fzvA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 2.85e-01 83.3% 50.0%
3hdiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 40.0 2.90e-01 81.8% 74.7%
3q9dB01 1.20.58.1050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 3.35e-01 72.7% 96.6%
2i2oA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 40.0 2.93e-01 89.4% 51.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3412402 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 50.0 4.09e-01 77.3% 53.0%
5003109 1079.1.1.1 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD 0.67 44.0 2.95e-01 78.8% 19.6%
3600071 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 49.0 4.94e-01 80.3% 95.4%
3253352 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.59 45.0 4.39e-01 83.3% 89.3%
3236742 2484.1.1.233 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.58 42.0 2.75e-01 77.3% 54.8%
3390666 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 39.0 3.14e-01 71.2% 64.6%
3612098 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 2.87e-01 87.9% 48.8%