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MW805361.1__URC15279.1__GD1_155__00155

Bact-Vir

MW805361.1__URC15279.1__GD1_155__00155

Identity

Accession:
MW805361 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Taxonomy

Paraglaciecola_Antarctic_GD_virus_1

TaxID: 2945130

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-71
PDB
Domain cluster: rep: MG592537.1__AUR92207.1__NVP1170O_094__00094__D5-73
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.75 55.0 5.39e-01 91.0% 71.8%
1sfeA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.71 49.0 4.69e-01 100.0% 60.5%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.70 54.0 4.12e-01 100.0% 36.8%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.67 54.0 4.95e-01 100.0% 67.0%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.66 36.0 4.27e-01 70.1% 81.8%
4gniA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 50.0 4.61e-01 100.0% 65.5%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 42.0 4.18e-01 89.6% 65.3%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.62 47.0 3.56e-01 100.0% 33.3%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 45.0 3.41e-01 100.0% 32.7%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 34.0 2.94e-01 74.6% 34.3%
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.59 35.0 3.76e-01 76.1% 69.1%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.59 34.0 2.77e-01 100.0% 27.9%
3d2fA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 43.0 4.00e-01 100.0% 61.3%
1vq8N00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 50.0 3.70e-01 100.0% 38.7%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 50.0 4.82e-01 100.0% 92.1%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 3.94e-01 91.0% 74.2%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 3.85e-01 89.6% 67.6%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 36.0 3.15e-01 97.0% 39.6%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 32.0 3.30e-01 80.6% 56.1%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 46.0 3.82e-01 100.0% 50.8%
2cr4A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 48.0 4.24e-01 98.5% 72.7%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 48.0 4.09e-01 100.0% 66.4%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 37.0 3.70e-01 89.6% 67.6%
3rbtD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 44.0 3.64e-01 95.5% 48.0%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 47.0 4.19e-01 100.0% 70.0%
1hkgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 46.0 3.80e-01 100.0% 55.4%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 37.0 2.88e-01 70.1% 37.9%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.64e-01 94.0% 55.3%
2eobA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 47.0 3.99e-01 100.0% 61.1%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 46.0 4.11e-01 100.0% 71.0%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 44.0 3.35e-01 100.0% 39.9%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 45.0 3.71e-01 100.0% 60.2%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 42.0 3.87e-01 100.0% 72.2%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 29.0 3.13e-01 74.6% 66.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 41.0 3.73e-01 94.0% 66.3%
2qmqA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 36.0 2.42e-01 76.1% 26.3%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 44.0 3.55e-01 100.0% 51.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.50 43.0 3.48e-01 100.0% 83.6%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.50 43.0 3.59e-01 100.0% 62.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927652 2484.5.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.74 53.0 4.51e-01 100.0% 46.4%
4645958 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.69 37.0 3.96e-01 70.1% 58.3%
5022340 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 43.0 4.30e-01 91.0% 61.4%
4997538 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.66 48.0 4.45e-01 100.0% 61.2%
3962456 7059.1.1.0 ↗ a+b complex topology › SatS C-terminal domain › SatS C-terminal domain › SatS C-terminal domain 0.66 59.0 4.25e-01 100.0% 41.7%
4945290 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 46.0 4.79e-01 89.6% 83.3%
3737235 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 34.0 3.49e-01 86.6% 53.8%
3967805 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 32.0 3.57e-01 70.1% 61.8%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 37.0 4.06e-01 94.0% 72.7%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.61 32.0 3.51e-01 80.6% 58.2%
3473111 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 52.0 3.12e-01 100.0% 14.8%
5047929 2484.1.1.75 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e 0.58 52.0 3.58e-01 100.0% 31.6%
3482073 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 38.0 4.05e-01 89.6% 76.7%
3514017 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 50.0 4.22e-01 98.5% 67.0%
3937352 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 50.0 4.20e-01 100.0% 56.5%
3579037 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 50.0 4.35e-01 100.0% 72.4%
5026400 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.57 33.0 3.39e-01 76.1% 58.5%
3218472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 49.0 4.01e-01 97.0% 60.0%
3941356 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 48.0 4.03e-01 97.0% 60.0%
3583928 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 48.0 4.19e-01 97.0% 70.5%
4443623 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.56 48.0 3.19e-01 100.0% 22.9%
3707085 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.56 46.0 3.22e-01 91.0% 47.3%
1140900 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.56 33.0 3.45e-01 80.6% 62.7%
2987316 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 49.0 4.07e-01 100.0% 58.7%
3920675 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.56 38.0 3.68e-01 91.0% 62.7%
4868887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 30.0 3.64e-01 70.1% 97.1%
3247002 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 49.0 4.17e-01 100.0% 69.1%
3618372 2484.1.1.99 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.56 48.0 4.05e-01 100.0% 65.0%
409729 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 48.0 4.14e-01 98.5% 65.1%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.55 38.0 3.41e-01 92.5% 49.0%
5001270 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 37.0 3.58e-01 89.6% 60.0%
943 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.55 36.0 3.16e-01 94.0% 45.0%
3733008 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.54 47.0 3.06e-01 100.0% 32.2%
4439294 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 46.0 3.87e-01 100.0% 56.8%
3584249 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.54 37.0 3.31e-01 94.0% 45.5%
5039400 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.54 46.0 3.05e-01 100.0% 88.3%
4941649 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.46e-01 92.5% 53.7%
4498611 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.53 45.0 3.30e-01 100.0% 33.7%
3802643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 42.0 3.76e-01 92.5% 61.1%
3740759 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.53 38.0 3.96e-01 88.1% 85.0%
3427749 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.53 39.0 3.97e-01 92.5% 81.5%
3308710 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 34.0 3.38e-01 89.6% 61.4%
3957486 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 34.0 2.86e-01 80.6% 37.5%
2801086 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 44.0 2.84e-01 100.0% 94.7%
3983395 2484.1.1.136 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL 0.52 47.0 2.96e-01 100.0% 20.6%
3619626 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 44.0 3.97e-01 97.0% 76.8%
4282509 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 2.59e-01 100.0% 60.4%
3973778 3982.1.1.0 ↗ a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ 0.52 38.0 3.36e-01 86.6% 53.0%
3938170 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.51 44.0 3.46e-01 100.0% 48.0%
4932452 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.79e-01 94.0% 92.6%
3853098 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 41.0 3.60e-01 89.6% 77.0%
4109123 2484.1.1.27 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA 0.51 45.0 3.17e-01 100.0% 33.3%
4492006 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.51 43.0 2.93e-01 100.0% 91.9%
3238926 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.51 38.0 2.83e-01 97.0% 30.6%
3929256 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.51 43.0 3.49e-01 100.0% 82.9%
3540737 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 40.0 2.93e-01 94.0% 94.9%
3636596 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 33.0 3.49e-01 97.0% 92.0%
3483784 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 42.0 3.74e-01 100.0% 66.7%