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MW805361.1__URC15326.1__GD1_202__00202

Bact-Vir

MW805361.1__URC15326.1__GD1_202__00202

Identity

Accession:
MW805361 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Taxonomy

TaxID: 2945130

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-22_76-142
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 40.0 5.11e-01 92.0% 98.0%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 41.0 3.88e-01 96.6% 51.5%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 53.0 4.76e-01 94.3% 62.0%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 52.0 5.15e-01 97.7% 81.3%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.93e-01 90.8% 77.4%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 55.0 4.67e-01 94.3% 62.4%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 38.0 4.62e-01 89.7% 98.1%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 4.72e-01 94.3% 68.8%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.20e-01 94.3% 49.7%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.88e-01 94.3% 83.9%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.62 54.0 4.60e-01 97.7% 84.2%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.94e-01 94.3% 76.7%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.77e-01 94.3% 73.8%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 43.0 3.60e-01 72.4% 96.8%
1zsqA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 5.03e-01 95.4% 80.2%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.68e-01 94.3% 77.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 56.0 4.95e-01 100.0% 73.4%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 54.0 4.47e-01 100.0% 100.0%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 53.0 4.60e-01 97.7% 99.3%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.71e-01 98.9% 74.5%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.96e-01 94.3% 84.8%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.90e-01 94.3% 78.1%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.60 50.0 4.67e-01 90.8% 94.5%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 34.0 3.90e-01 100.0% 75.8%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.72e-01 97.7% 75.8%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.09e-01 94.3% 51.7%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 4.58e-01 100.0% 97.8%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.63e-01 98.9% 95.5%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 4.53e-01 100.0% 97.8%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 50.0 4.39e-01 95.4% 85.7%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.76e-01 97.7% 76.1%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.59 49.0 4.25e-01 94.3% 59.8%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.43e-01 100.0% 93.6%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 51.0 4.07e-01 100.0% 79.7%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 51.0 4.49e-01 100.0% 85.9%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.53e-01 94.3% 76.1%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.58 48.0 4.30e-01 89.7% 88.4%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 4.46e-01 97.7% 99.2%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 46.0 4.27e-01 89.7% 98.3%
4ioyX01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.58 49.0 4.37e-01 94.3% 66.4%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.57e-01 100.0% 93.3%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.57 51.0 4.45e-01 100.0% 75.9%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 48.0 3.92e-01 100.0% 92.0%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 48.0 4.79e-01 98.9% 100.0%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.54 44.0 4.03e-01 90.8% 76.1%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 4.05e-01 81.6% 100.0%
5itqA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.51 44.0 3.89e-01 100.0% 71.2%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.68e-01 77.0% 81.0%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.50 44.0 4.09e-01 100.0% 78.6%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.72e-01 86.2% 99.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890750 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 59.0 5.90e-01 94.3% 78.9%
3467267 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.73 45.0 5.17e-01 89.7% 84.6%
3742641 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.73 59.0 5.41e-01 98.9% 68.2%
3235400 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.72 55.0 5.53e-01 90.8% 79.8%
3742330 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 57.0 5.14e-01 94.3% 63.5%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 43.0 5.05e-01 100.0% 88.3%
3570691 220.1.1.208 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.70 56.0 5.17e-01 94.3% 68.2%
3854547 220.1.1.208 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.70 56.0 5.01e-01 94.3% 62.5%
3390648 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 55.0 4.96e-01 94.3% 61.7%
3509508 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.69 54.0 5.26e-01 94.3% 75.8%
3927945 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 52.0 4.76e-01 94.3% 60.9%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 40.0 4.36e-01 96.6% 71.4%
4007999 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.68 42.0 3.65e-01 96.6% 40.7%
3478713 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 56.0 5.03e-01 94.3% 65.0%
3707347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.97e-01 100.0% 98.2%
3700838 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 54.0 4.68e-01 94.3% 57.7%
3525358 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.67 55.0 4.92e-01 98.9% 64.2%
4646593 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 42.0 3.64e-01 96.6% 41.5%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.34e-01 100.0% 70.7%
3574847 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.66 54.0 4.52e-01 95.4% 52.4%
3255173 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.66 54.0 4.97e-01 95.4% 67.8%
3486369 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 5.53e-01 94.3% 92.8%
3489971 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 5.04e-01 94.3% 79.2%
3937459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 5.45e-01 94.3% 83.0%
3699518 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 51.0 4.53e-01 94.3% 58.4%
3219484 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.65 52.0 5.01e-01 98.9% 75.0%
3531579 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 51.0 4.20e-01 90.8% 47.1%
3491895 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.65 50.0 4.85e-01 95.4% 73.0%
3211868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 4.77e-01 94.3% 77.9%
3593635 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 54.0 5.02e-01 90.8% 73.6%
3259128 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 51.0 4.52e-01 90.8% 59.2%
3259098 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 54.0 4.79e-01 94.3% 65.0%
3596312 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 51.0 4.45e-01 90.8% 56.9%
3801512 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.72e-01 95.4% 64.2%
3579987 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.64 50.0 4.66e-01 97.7% 66.4%
3270836 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 51.0 4.68e-01 94.3% 65.2%
4026264 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 58.0 4.80e-01 98.9% 60.0%
3515688 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.81e-01 90.8% 81.7%
3618718 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 5.01e-01 94.3% 72.2%
3452440 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 5.02e-01 94.3% 71.3%
3609378 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 51.0 5.03e-01 94.3% 80.0%
3170306 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.63 54.0 4.65e-01 94.3% 77.0%
3709315 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 54.0 4.81e-01 94.3% 67.5%
3734237 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.62 54.0 3.61e-01 95.4% 30.6%
3312716 220.1.1.172 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PRMT_N 0.62 51.0 4.82e-01 94.3% 76.2%
3805898 220.1.1.80 beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N 0.61 52.0 5.01e-01 94.3% 85.0%
3925754 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 36.0 3.16e-01 90.8% 38.5%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.59 51.0 4.58e-01 94.3% 72.5%
4023915 220.1.1.53 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.58 53.0 4.81e-01 100.0% 83.5%
4511042 5090.1.1.7 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 0.58 44.0 2.90e-01 82.8% 74.3%
3813657 220.1.1.172 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PRMT_N 0.58 48.0 4.53e-01 94.3% 78.2%
3243986 220.1.1.79 beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.58 50.0 4.68e-01 94.3% 81.0%
4024877 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.31e-01 98.9% 64.8%
4940356 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.54 38.0 3.01e-01 94.3% 33.7%
3598462 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 4.23e-01 100.0% 76.8%
3616618 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.90e-01 90.8% 40.0%
3708010 11.1.1.1033 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30215 0.52 39.0 2.92e-01 81.6% 96.7%
3254772 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 42.0 3.29e-01 95.4% 80.5%
3287961 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.50 37.0 2.71e-01 80.5% 38.0%
D2 high residues 25-71
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.66 48.0 3.24e-01 80.9% 51.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012156 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 46.0 3.78e-01 100.0% 61.1%