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MW805362.1__URC15423.1__JLT2_55__00055
Bact-VirMW805362.1__URC15423.1__JLT2_55__00055
Identity
- Accession:
- MW805362 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-77
Domain cluster:
rep: OQ927986.1__WIF21984.1__X__00031__D13-77
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09669.16 best | Phage_pRha | 60.4 | 2.90e-16 | 89.0% | 76.9% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 47.0 | 4.21e-01 | 91.8% | 53.7% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.63 | 52.0 | 5.02e-01 | 93.2% | 80.5% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 44.0 | 3.77e-01 | 86.3% | 47.5% |
| 2od5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 4.31e-01 | 84.9% | 68.1% |
| 1kyzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 4.13e-01 | 93.2% | 63.1% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.95e-01 | 90.4% | 61.0% |
| 1fpqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 3.99e-01 | 97.3% | 59.7% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 44.0 | 3.31e-01 | 91.8% | 85.4% |
| 3pg1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 42.0 | 3.63e-01 | 89.0% | 79.8% |
| 7ewfA01 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 41.0 | 2.93e-01 | 86.3% | 25.0% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.54 | 42.0 | 4.17e-01 | 94.5% | 80.8% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.54 | 44.0 | 3.85e-01 | 94.5% | 72.9% |
| 3sm3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 44.0 | 3.24e-01 | 93.2% | 98.1% |
| 3hr6A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 38.0 | 3.07e-01 | 76.7% | 66.9% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 41.0 | 4.13e-01 | 95.9% | 83.8% |
| 2axyA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 45.0 | 4.60e-01 | 95.9% | 97.2% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 45.0 | 3.86e-01 | 100.0% | 73.0% |
| 5bmnA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.53 | 43.0 | 4.22e-01 | 94.5% | 98.8% |
| 3wx4A00 | 3.30.70.2770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 4.04e-01 | 95.9% | 78.6% |
| 3by8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 39.0 | 3.37e-01 | 83.6% | 89.5% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 40.0 | 3.90e-01 | 87.7% | 73.6% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 43.0 | 4.08e-01 | 95.9% | 79.8% |
| 4dzrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 39.0 | 3.13e-01 | 83.6% | 65.0% |
| 3c1mA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.52 | 44.0 | 3.52e-01 | 100.0% | 90.9% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.70e-01 | 89.0% | 68.9% |
| 1yz7A02 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.52 | 43.0 | 4.08e-01 | 95.9% | 84.4% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 42.0 | 4.09e-01 | 94.5% | 100.0% |
| 1p5dX04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 43.0 | 4.08e-01 | 97.3% | 92.5% |
| 3c8cB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 40.0 | 3.44e-01 | 87.7% | 58.3% |
| 2qbyB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.86e-01 | 89.0% | 83.5% |
| 3popA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.52 | 41.0 | 3.00e-01 | 94.5% | 32.9% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.70e-01 | 89.0% | 66.0% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.51 | 32.0 | 2.82e-01 | 78.1% | 39.6% |
| 3fmbA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.88e-01 | 94.5% | 82.0% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 41.0 | 4.05e-01 | 95.9% | 85.0% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.55e-01 | 97.3% | 56.2% |
| 4qnyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 39.0 | 3.43e-01 | 86.3% | 70.6% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.89e-01 | 90.4% | 77.5% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.76e-01 | 94.5% | 74.8% |
| 1j20A02 | 3.90.1260.10 | Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 | 0.50 | 41.0 | 3.00e-01 | 91.8% | 55.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3984393 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.97 | 93.0 | 7.88e-01 | 100.0% | 66.4% |
| 3518030 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.90 | 81.0 | 8.29e-01 | 95.9% | 100.0% |
| 3947416 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.89 | 83.0 | 7.08e-01 | 100.0% | 70.9% |
| 3506247 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.85 | 75.0 | 5.29e-01 | 93.2% | 37.9% |
| 3986225 | 101.1.9.32 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT | 0.80 | 73.0 | 5.11e-01 | 97.3% | 36.1% |
| 4032453 | 101.1.9.78 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA | 0.77 | 70.0 | 6.38e-01 | 100.0% | 81.1% |
| 3968916 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.70 | 57.0 | 5.10e-01 | 100.0% | 62.9% |
| 3689135 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.70 | 51.0 | 4.83e-01 | 93.2% | 64.4% |
| 3230114 | 101.1.2.167 ↗ | alpha arrays › HTH › HTH › winged helix domain › XRN1_D2_D3 | 0.63 | 52.0 | 4.10e-01 | 91.8% | 63.2% |
| 4024211 | 101.1.9.9 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › XPA_C | 0.63 | 46.0 | 4.69e-01 | 91.8% | 81.4% |
| 3505855 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.61 | 53.0 | 5.19e-01 | 100.0% | 90.0% |
| 3983446 | 101.1.2.84 ↗ | alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA | 0.59 | 45.0 | 4.11e-01 | 84.9% | 61.0% |
| 5056655 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 47.0 | 4.55e-01 | 91.8% | 78.8% |
| 4819807 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.58 | 48.0 | 4.76e-01 | 95.9% | 96.2% |
| 5077356 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 44.0 | 3.77e-01 | 84.9% | 57.6% |
| 3705453 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.56 | 48.0 | 3.41e-01 | 100.0% | 62.0% |
| 3488429 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.56 | 43.0 | 3.25e-01 | 82.2% | 32.4% |
| 5011620 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 4.05e-01 | 89.0% | 67.8% |
| 4633760 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.55 | 44.0 | 3.93e-01 | 97.3% | 59.3% |
| 5058039 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.55 | 46.0 | 4.47e-01 | 100.0% | 83.5% |
| 5010819 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 41.0 | 3.24e-01 | 86.3% | 38.7% |
| 2494143 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.55 | 43.0 | 3.88e-01 | 90.4% | 65.8% |
| 3586428 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.55 | 44.0 | 3.98e-01 | 100.0% | 62.4% |
| 4932565 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.54 | 47.0 | 4.45e-01 | 100.0% | 82.2% |
| 5082386 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 42.0 | 3.67e-01 | 89.0% | 58.1% |
| 5028314 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.54 | 43.0 | 3.81e-01 | 86.3% | 66.7% |
| 4927282 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.54 | 46.0 | 3.20e-01 | 100.0% | 52.4% |
| 3781976 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 45.0 | 4.33e-01 | 95.9% | 83.5% |
| 3714094 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 45.0 | 4.04e-01 | 100.0% | 72.7% |
| 4979815 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.53 | 39.0 | 3.75e-01 | 84.9% | 66.7% |
| 4992865 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.53 | 43.0 | 4.14e-01 | 98.6% | 81.2% |
| 3215882 | 304.8.1.72 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP | 0.53 | 45.0 | 4.22e-01 | 97.3% | 82.2% |
| 3720044 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 44.0 | 4.18e-01 | 95.9% | 78.7% |
| 3706721 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.92e-01 | 89.0% | 80.0% |
| 5051534 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.52 | 42.0 | 3.21e-01 | 90.4% | 38.4% |
| 4976949 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.52 | 42.0 | 4.11e-01 | 98.6% | 81.2% |
| 5078552 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 40.0 | 3.14e-01 | 100.0% | 36.6% |
| 4980535 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.51 | 34.0 | 3.18e-01 | 79.5% | 52.6% |
| 4969865 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.51 | 38.0 | 3.37e-01 | 94.5% | 51.7% |
| 4179400 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.50 | 43.0 | 2.96e-01 | 100.0% | 43.7% |
| 3465836 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.58e-01 | 84.9% | 71.0% |
| 4973817 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.50 | 40.0 | 3.74e-01 | 97.3% | 70.5% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 43.0 | 3.50e-01 | 91.8% | 74.6% |
| 5078768 | 101.1.2.819 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27231 | 0.50 | 40.0 | 3.21e-01 | 90.4% | 73.8% |
| 4649438 | 331.10.1.2 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › AdoMet_dc | 0.50 | 34.0 | 2.41e-01 | 71.2% | 77.3% |