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MW805362.1__URC15435.1__JLT2_67__00067

Bact-Vir

MW805362.1__URC15435.1__JLT2_67__00067

Identity

Accession:
MW805362 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Taxonomy

Paraglaciecola_Antarctic_JLT_virus_2

TaxID: 2945131

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 44.0 4.22e-01 88.1% 52.2%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 63.0 5.17e-01 98.3% 64.5%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 63.0 5.24e-01 100.0% 64.1%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 45.0 3.34e-01 100.0% 25.0%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 62.0 5.16e-01 100.0% 79.6%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 60.0 4.94e-01 98.3% 65.1%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 61.0 4.91e-01 100.0% 59.1%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.68 47.0 4.16e-01 89.8% 50.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.68 55.0 4.31e-01 93.2% 88.4%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 58.0 4.78e-01 100.0% 58.8%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 59.0 4.86e-01 100.0% 74.3%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.86e-01 100.0% 67.0%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 5.03e-01 100.0% 71.4%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.71e-01 100.0% 67.0%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 48.0 2.96e-01 79.7% 17.7%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 57.0 4.30e-01 100.0% 49.3%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 57.0 4.89e-01 100.0% 71.6%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 4.74e-01 100.0% 68.0%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 4.59e-01 84.7% 93.0%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.32e-01 100.0% 62.0%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 43.0 4.20e-01 76.3% 100.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 44.0 3.60e-01 83.1% 96.5%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 4.48e-01 88.1% 95.7%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 3.97e-01 76.3% 77.3%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 3.86e-01 76.3% 100.0%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 4.33e-01 98.3% 77.1%
5mj3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.83e-01 83.1% 70.2%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 4.02e-01 79.7% 78.7%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.73e-01 86.4% 92.6%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 3.95e-01 81.4% 76.1%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.53 43.0 3.62e-01 88.1% 82.3%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 45.0 3.15e-01 100.0% 48.4%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 2.68e-01 86.4% 37.6%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.87e-01 83.1% 82.8%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 47.0 4.09e-01 100.0% 75.0%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 44.0 3.32e-01 100.0% 93.9%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.52 37.0 3.75e-01 88.1% 78.0%
2ftyA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.52 40.0 3.58e-01 89.8% 87.2%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 43.0 4.10e-01 100.0% 83.1%
3duzA02 2.40.50.710 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 36.0 3.73e-01 89.8% 83.3%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 39.0 3.30e-01 84.7% 80.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.50 42.0 3.64e-01 100.0% 91.2%
3fvcA01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.83e-01 100.0% 95.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3398379 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.74 65.0 5.19e-01 100.0% 58.3%
4028176 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 61.0 5.04e-01 100.0% 58.2%
4979972 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 60.0 4.62e-01 100.0% 50.4%
3849761 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 60.0 3.75e-01 100.0% 24.6%
4001872 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.68 59.0 4.20e-01 100.0% 42.2%
4202176 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.68 58.0 4.15e-01 100.0% 40.0%
3595376 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 4.32e-01 100.0% 40.0%
3419950 220.1.1.113 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_11 0.67 58.0 4.51e-01 100.0% 74.1%
3414272 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.67 58.0 5.02e-01 100.0% 69.5%
3945385 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.67 46.0 3.28e-01 89.8% 23.9%
3576021 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 57.0 4.49e-01 100.0% 51.5%
4650312 9.1.1.67 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PF29223 0.65 51.0 4.10e-01 89.8% 43.5%
4553383 319.1.1.27 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF5450 0.63 46.0 4.37e-01 78.0% 77.1%
4149829 220.1.1.114 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF5673 0.62 48.0 4.54e-01 100.0% 70.7%
3276072 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.61 51.0 4.37e-01 100.0% 59.0%
3590632 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 46.0 4.70e-01 84.7% 94.5%
3589829 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.58 46.0 3.85e-01 88.1% 67.6%
5027788 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 3.77e-01 88.1% 91.4%
3590812 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 44.0 4.46e-01 98.3% 95.0%
5051713 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 44.0 3.44e-01 93.2% 67.8%
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.28e-01 84.7% 90.9%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.54 44.0 4.20e-01 94.9% 77.1%
5051108 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 41.0 3.32e-01 88.1% 66.2%
1038 65.1.1.8 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › EF_0837-like_N 0.53 36.0 3.89e-01 83.1% 82.4%
5074142 2.14.1.0 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.52 41.0 3.87e-01 89.8% 90.7%
4614219 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.52 44.0 3.01e-01 98.3% 71.3%
4287737 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.51 40.0 2.65e-01 94.9% 40.9%
4960648 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.51 41.0 3.75e-01 91.5% 85.0%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.51 39.0 2.99e-01 91.5% 58.0%
4964190 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 44.0 3.54e-01 98.3% 74.8%
4474965 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.50 41.0 2.80e-01 100.0% 78.5%