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MW805363.1__URC15473.1__BD1_32__00032

Bact-Vir

MW805363.1__URC15473.1__BD1_32__00032

Identity

Accession:
MW805363 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

TaxID: 2945128

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-137
PDB
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7pbkA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.82 58.0 4.69e-01 100.0% 40.5%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 59.0 4.75e-01 99.2% 43.4%
1vk0A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.77 54.0 4.61e-01 100.0% 45.5%
1d8yA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 54.0 4.46e-01 100.0% 45.6%
1s5jA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 63.0 5.35e-01 100.0% 70.6%
2d5rA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 63.0 4.89e-01 100.0% 66.3%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 60.0 5.84e-01 100.0% 87.0%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 62.0 5.26e-01 100.0% 70.3%
4dccA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.59 35.0 3.55e-01 100.0% 56.6%
1ynsA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.59 37.0 3.51e-01 100.0% 52.7%
2i6xA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 34.0 3.39e-01 100.0% 54.5%
1xezA01 3.30.110.130 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain 0.52 27.0 3.26e-01 92.8% 75.3%
3h05B00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 32.0 2.98e-01 100.0% 46.6%
1v96A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.51 30.0 2.93e-01 100.0% 49.3%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 35.0 3.58e-01 100.0% 73.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3261268 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 62.0 4.24e-01 100.0% 27.3%
3980678 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 55.0 3.92e-01 100.0% 29.9%
5045899 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.71 61.0 5.30e-01 100.0% 62.8%
4944521 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 64.0 5.35e-01 100.0% 67.1%
3803681 2484.1.1.45 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.69 65.0 4.73e-01 100.0% 61.3%
5028008 2484.1.1.132 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo2 0.68 63.0 5.42e-01 100.0% 66.8%
4939488 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.67 62.0 4.65e-01 100.0% 43.4%
3742269 2484.1.1.90 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C 0.64 57.0 4.79e-01 100.0% 59.0%
3595179 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 59.0 4.67e-01 100.0% 79.6%
3710573 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.63 59.0 4.66e-01 100.0% 79.6%
3387142 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 42.0 3.65e-01 100.0% 45.3%
5017082 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 58.0 4.10e-01 100.0% 36.3%
5023939 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 44.0 4.64e-01 98.4% 84.5%
5007927 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 42.0 4.13e-01 98.4% 75.2%
4626944 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 42.0 4.27e-01 98.4% 89.6%
D2 medium residues 138-224
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d5aA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 55.0 4.14e-01 92.0% 38.7%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 57.0 4.42e-01 100.0% 45.9%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 33.0 2.77e-01 78.2% 35.7%
5jjxA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 35.0 2.44e-01 72.4% 27.9%
2g7rA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.50 31.0 3.18e-01 97.7% 60.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1236883 2484.1.1.96 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_polI_exo1 0.58 42.0 3.42e-01 78.2% 38.6%
5029140 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 43.0 4.34e-01 97.7% 84.4%
D3 medium residues 261-344
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.75 48.0 4.37e-01 83.3% 49.5%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 45.0 5.16e-01 83.3% 85.2%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.69 37.0 4.85e-01 78.6% 95.7%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.69 62.0 6.18e-01 96.4% 100.0%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.68 62.0 5.60e-01 98.8% 90.9%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.67 62.0 5.54e-01 100.0% 96.5%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 38.0 4.57e-01 73.8% 89.1%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 48.0 5.06e-01 79.8% 87.8%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 42.0 4.39e-01 79.8% 72.2%
2mmbA00 4.10.640.20 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › 0.63 47.0 4.29e-01 78.6% 81.3%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 54.0 4.87e-01 98.8% 95.8%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.62 44.0 4.59e-01 79.8% 81.8%
3ihvA03 1.25.40.900 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 37.0 3.16e-01 79.8% 35.3%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 45.0 4.67e-01 81.0% 84.4%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.61 38.0 4.09e-01 86.9% 72.6%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.61 41.0 4.41e-01 90.5% 81.7%
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.61 48.0 3.92e-01 100.0% 44.8%
6ofsA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 48.0 3.61e-01 88.1% 63.2%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.59 51.0 4.55e-01 100.0% 88.1%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 53.0 4.35e-01 100.0% 72.0%
2kmgA00 3.30.70.3580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein 0.59 52.0 4.41e-01 100.0% 87.3%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 41.0 3.61e-01 79.8% 59.2%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.55 48.0 4.33e-01 97.6% 71.3%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 42.0 3.79e-01 83.3% 76.1%
2vl7A02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.53 46.0 4.26e-01 100.0% 97.3%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 3.68e-01 95.2% 54.4%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 37.0 3.81e-01 76.2% 87.7%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 3.40e-01 81.0% 73.1%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.51 38.0 3.36e-01 90.5% 52.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.50 39.0 3.49e-01 83.3% 83.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948675 3930.1.1.3 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.77 57.0 4.77e-01 100.0% 46.4%
3487907 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 44.0 3.65e-01 83.3% 35.7%
4024570 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.69 49.0 4.74e-01 79.8% 65.3%
5065130 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.67 59.0 5.92e-01 94.0% 98.8%
5001078 633.2.1.0 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.67 61.0 5.85e-01 98.8% 92.6%
3725615 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 51.0 5.25e-01 79.8% 83.7%
3686594 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.66 50.0 5.19e-01 81.0% 83.7%
3697356 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 49.0 4.89e-01 79.8% 92.9%
3974488 532.2.1.0 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.61 43.0 4.35e-01 77.4% 72.9%
3926031 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 47.0 4.56e-01 82.1% 72.6%
3244235 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 50.0 4.75e-01 90.5% 96.0%
3992672 109.4.1.911 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.60 47.0 2.84e-01 82.1% 13.9%
3505829 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.60 52.0 4.25e-01 92.9% 76.0%
5017973 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 44.0 3.67e-01 82.1% 44.0%
3649945 604.12.1.70 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › FIGL1_N 0.60 45.0 4.38e-01 81.0% 72.6%
3625185 109.4.1.911 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.59 46.0 2.77e-01 82.1% 13.9%
3940772 3948.1.1.0 alpha bundles › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain 0.59 51.0 4.10e-01 100.0% 66.9%
3910638 109.4.1.571 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Pex26 0.59 42.0 3.04e-01 79.8% 27.0%
3385165 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 49.0 3.52e-01 89.3% 40.4%
3423917 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.58 42.0 3.47e-01 77.4% 88.4%
4854358 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.56 45.0 3.10e-01 86.9% 55.7%
3238459 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.56 35.0 3.94e-01 76.2% 81.5%
3163958 507.1.1.2 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaG_DnaB_bind 0.56 51.0 4.22e-01 96.4% 81.4%
3473566 622.1.1.19 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › Casc1_N 0.56 42.0 4.05e-01 79.8% 88.4%
5000728 10.28.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.55 49.0 4.42e-01 97.6% 71.8%