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MW805364.1__URC15568.1__DB2_66__00067
Bact-VirMW805364.1__URC15568.1__DB2_66__00067
Identity
- Accession:
- MW805364 ↗
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Taxonomy
TaxID: 2945129
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-125
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07102.18 best | YbcO | 63.1 | 2.80e-17 | 93.9% | 65.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g27A01 | 3.30.50.20 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › prophage-derive protein ybcO | 0.80 | 61.0 | 6.85e-01 | 80.5% | 98.5% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.64 | 32.0 | 3.08e-01 | 98.8% | 38.9% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.59 | 45.0 | 3.21e-01 | 84.1% | 86.2% |
| 3m1cA01 | 3.10.360.40 | Alpha Beta › Roll › Antimicrobial Peptide, Beta-defensin 2; Chain A › | 0.55 | 27.0 | 3.14e-01 | 85.4% | 65.4% |
| 2ra9A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.53 | 36.0 | 3.74e-01 | 89.0% | 78.1% |
| 7mdhA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 41.0 | 3.32e-01 | 90.2% | 97.1% |
| 4uulA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 44.0 | 3.46e-01 | 98.8% | 50.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964177 | 377.7.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › YbcO | 0.90 | 83.0 | 8.00e-01 | 96.3% | 96.7% |
| 119353 | 377.7.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › YbcO | 0.83 | 77.0 | 7.74e-01 | 97.6% | 97.5% |
| 3978374 | 378.1.1.18 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF968 | 0.77 | 69.0 | 6.88e-01 | 98.8% | 95.3% |
| 4586687 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.60 | 52.0 | 3.21e-01 | 96.3% | 31.0% |
| 5039655 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.60 | 47.0 | 4.77e-01 | 85.4% | 96.2% |
| 3469045 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.54 | 41.0 | 4.30e-01 | 92.7% | 90.7% |
| 4069735 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.54 | 47.0 | 2.92e-01 | 100.0% | 29.0% |
| 4309139 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.54 | 43.0 | 2.66e-01 | 86.6% | 38.3% |
| 4405373 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.54 | 43.0 | 2.67e-01 | 87.8% | 38.8% |
| 4344379 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 42.0 | 2.64e-01 | 86.6% | 39.0% |
| 3691745 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 42.0 | 2.64e-01 | 87.8% | 66.9% |
| 4012769 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.53 | 42.0 | 2.62e-01 | 86.6% | 38.8% |
| 3727696 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 42.0 | 2.59e-01 | 86.6% | 69.7% |
| 3692049 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.52 | 45.0 | 2.86e-01 | 100.0% | 34.6% |
| 4590495 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.52 | 42.0 | 2.59e-01 | 87.8% | 40.2% |
| 3732911 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.52 | 45.0 | 2.84e-01 | 100.0% | 29.1% |
| 3647850 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.51 | 44.0 | 2.83e-01 | 100.0% | 26.1% |
| 3208148 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.50 | 37.0 | 2.49e-01 | 80.5% | 58.4% |