←Back to structures
MW812343.1__QVW56169.1__pEaSNUABM6_00033__00023
Bact-VirMW812343.1__QVW56169.1__pEaSNUABM6_00033__00023
Identity
- Accession:
- MW812343 ↗
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Machinavirus›
Erwinia_phage_pEa_SNUABM_6
TaxID: 2835896
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-92
Domain cluster:
rep: MT811961.1__QNI21044.1__X__00098__D3-98
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20287.4 best | SH3DP | 88.0 | 5.10e-25 | 96.6% | 72.1% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 46.0 | 5.52e-01 | 93.3% | 87.9% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 45.0 | 5.62e-01 | 94.4% | 94.5% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 44.0 | 4.86e-01 | 96.6% | 75.0% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 5.69e-01 | 100.0% | 87.0% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 44.0 | 4.90e-01 | 96.6% | 77.5% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 44.0 | 5.18e-01 | 94.4% | 91.9% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 43.0 | 5.07e-01 | 97.8% | 93.2% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.66 | 37.0 | 4.61e-01 | 84.3% | 94.1% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 44.0 | 5.05e-01 | 100.0% | 96.8% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.65 | 37.0 | 4.50e-01 | 85.4% | 89.3% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.65 | 37.0 | 4.64e-01 | 85.4% | 96.2% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.63 | 36.0 | 4.46e-01 | 85.4% | 96.1% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.62 | 36.0 | 4.34e-01 | 91.0% | 91.1% |
| 1awjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 40.0 | 4.25e-01 | 92.1% | 75.3% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 42.0 | 4.45e-01 | 97.8% | 79.5% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 41.0 | 4.75e-01 | 93.3% | 100.0% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.61 | 37.0 | 4.40e-01 | 91.0% | 91.5% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.61 | 38.0 | 4.38e-01 | 87.6% | 87.5% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 42.0 | 4.72e-01 | 94.4% | 95.5% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 33.0 | 3.95e-01 | 83.1% | 87.5% |
| 2b2cA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.57 | 37.0 | 4.27e-01 | 94.4% | 92.2% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 30.0 | 3.85e-01 | 88.8% | 91.8% |
| 3itwA02 | 3.30.720.110 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 28.0 | 3.42e-01 | 93.3% | 76.8% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 34.0 | 3.72e-01 | 89.9% | 78.9% |
| 2c4xA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 30.0 | 3.00e-01 | 100.0% | 51.1% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 31.0 | 3.49e-01 | 86.5% | 77.6% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4368811 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.92 | 50.0 | 6.42e-01 | 95.5% | 89.1% |
| 4139090 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.91 | 51.0 | 6.53e-01 | 96.6% | 92.7% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.86 | 57.0 | 6.68e-01 | 97.8% | 93.8% |
| 5027750 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 44.0 | 5.59e-01 | 92.1% | 87.3% |
| 5028741 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 50.0 | 6.26e-01 | 98.9% | 100.0% |
| 3968342 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.82 | 46.0 | 5.97e-01 | 93.3% | 96.2% |
| 4505316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 52.0 | 6.24e-01 | 98.9% | 96.7% |
| 3979842 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.80 | 46.0 | 5.75e-01 | 93.3% | 92.7% |
| 5080336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 52.0 | 6.06e-01 | 100.0% | 92.2% |
| 4400642 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.80 | 52.0 | 5.34e-01 | 100.0% | 69.4% |
| 4158712 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.79 | 52.0 | 5.83e-01 | 100.0% | 85.7% |
| 3687350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 44.0 | 5.46e-01 | 89.9% | 90.9% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 58.0 | 5.36e-01 | 100.0% | 62.7% |
| 5061147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 60.0 | 5.90e-01 | 100.0% | 75.8% |
| 4071824 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.74 | 54.0 | 5.85e-01 | 100.0% | 89.3% |
| 4241924 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.74 | 44.0 | 4.39e-01 | 94.4% | 57.8% |
| 3929260 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 43.0 | 5.31e-01 | 95.5% | 94.5% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.73 | 46.0 | 5.26e-01 | 97.8% | 87.5% |
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 44.0 | 5.36e-01 | 96.6% | 98.2% |
| 2727964 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.72 | 46.0 | 5.39e-01 | 100.0% | 96.6% |
| 3591224 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 41.0 | 5.21e-01 | 94.4% | 100.0% |
| 4284709 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.72 | 42.0 | 5.08e-01 | 96.6% | 92.7% |
| 4605602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 44.0 | 4.96e-01 | 96.6% | 83.1% |
| 5052257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 40.0 | 4.68e-01 | 96.6% | 85.0% |
| 5055172 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.68 | 39.0 | 4.71e-01 | 86.5% | 90.9% |
| 5041849 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.66 | 38.0 | 4.62e-01 | 85.4% | 90.9% |
| 4068291 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.66 | 39.0 | 4.60e-01 | 89.9% | 86.7% |
| 4336845 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.66 | 38.0 | 4.43e-01 | 85.4% | 83.3% |
| 3973362 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.66 | 37.0 | 3.95e-01 | 85.4% | 62.5% |
| 4039507 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.65 | 37.0 | 4.52e-01 | 84.3% | 90.9% |
| 3987332 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.65 | 38.0 | 4.60e-01 | 86.5% | 92.7% |
| 4561487 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.64 | 37.0 | 4.56e-01 | 86.5% | 92.7% |
| 4407054 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.64 | 37.0 | 4.34e-01 | 85.4% | 85.0% |
| 3246255 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 40.0 | 4.50e-01 | 94.4% | 82.9% |
| 3900733 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 41.0 | 4.54e-01 | 94.4% | 84.3% |
| 4114201 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.63 | 38.0 | 4.37e-01 | 91.0% | 83.1% |
| 3910933 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.62 | 36.0 | 4.23e-01 | 89.9% | 85.0% |
| 5056181 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.61 | 35.0 | 4.24e-01 | 83.1% | 90.9% |
| 1030876 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.61 | 38.0 | 4.22e-01 | 87.6% | 80.0% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.60 | 42.0 | 4.52e-01 | 98.9% | 86.7% |
| 4031199 | 4.1.1.86 ↗ | beta barrels › SH3 › SH3 › SH3 › GW | 0.58 | 43.0 | 4.51e-01 | 94.4% | 86.3% |
| 3701345 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 48.0 | 5.01e-01 | 98.9% | 100.0% |
| 4041866 | 3699.1.1.0 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain | 0.57 | 36.0 | 4.12e-01 | 94.4% | 89.2% |
| 5051640 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.56 | 45.0 | 3.95e-01 | 91.0% | 63.4% |
| 3679362 | 4.1.1.351 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 | 0.55 | 46.0 | 4.76e-01 | 94.4% | 97.6% |
| 3394354 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.54 | 39.0 | 3.84e-01 | 77.5% | 97.0% |
| 4940372 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.54 | 33.0 | 3.65e-01 | 85.4% | 77.1% |
| 3511988 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.53 | 37.0 | 3.73e-01 | 73.0% | 90.0% |
| 3991065 | 4.1.1.334 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 | 0.52 | 41.0 | 4.29e-01 | 94.4% | 93.8% |
| 4019353 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.52 | 37.0 | 3.72e-01 | 75.3% | 91.1% |
| 3542430 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.51 | 38.0 | 2.71e-01 | 80.9% | 68.0% |
| 3934267 | 213.1.1.5 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS | 0.51 | 42.0 | 3.73e-01 | 95.5% | 72.1% |