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MW822144.1__QWT29812.1__SEA_KIMJONGPHILL_31__00031

Bact-Vir

MW822144.1__QWT29812.1__SEA_KIMJONGPHILL_31__00031

Identity

Accession:
MW822144 ↗
Kingdom:
phage

Quality

96.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zukovirus› Streptomyces_phage_KimJongPhill

TaxID: 2848886

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-89
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 51.0 3.76e-01 93.0% 44.6%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 52.0 4.89e-01 100.0% 97.2%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 50.0 3.59e-01 100.0% 79.5%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 48.0 3.75e-01 98.2% 97.1%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 49.0 3.60e-01 98.2% 90.4%
1oi6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 49.0 3.40e-01 100.0% 66.3%
3rykA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 50.0 3.54e-01 100.0% 84.0%
1o75A02 2.30.30.470 Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B 0.56 44.0 3.66e-01 91.2% 78.6%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.60e-01 89.5% 82.8%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 44.0 3.75e-01 87.7% 97.9%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.56 44.0 3.71e-01 94.7% 71.4%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.55 43.0 3.54e-01 91.2% 54.2%
2y26A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.41e-01 96.5% 78.4%
1y7eA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.55 41.0 3.46e-01 89.5% 72.9%
1elvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 42.0 3.47e-01 94.7% 58.7%
2olgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 43.0 3.60e-01 94.7% 67.0%
1j0hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.47e-01 93.0% 53.6%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 41.0 3.56e-01 93.0% 58.1%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.53 43.0 3.32e-01 94.7% 89.0%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.66e-01 94.7% 85.0%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.33e-01 93.0% 79.4%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 38.0 3.32e-01 86.0% 70.5%
1e40A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 40.0 2.46e-01 87.7% 17.9%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.52 42.0 3.49e-01 93.0% 64.8%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.52 42.0 3.48e-01 96.5% 86.8%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.58e-01 93.0% 68.0%
2zaiA04 2.60.40.3030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.15e-01 89.5% 62.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3478176 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 52.0 4.78e-01 86.0% 86.7%
3213122 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.63 52.0 4.42e-01 98.2% 61.0%
3488536 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 48.0 5.07e-01 84.2% 100.0%
3787437 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.60 50.0 3.09e-01 100.0% 82.5%
3475535 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.59 48.0 2.94e-01 96.5% 84.1%
3872568 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.59 49.0 3.56e-01 94.7% 57.6%
3601294 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 49.0 3.03e-01 100.0% 79.8%
3381129 1.1.5.34 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 0.58 47.0 3.49e-01 94.7% 76.5%
4447123 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.58 47.0 3.05e-01 96.5% 78.4%
2126755 9.28.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C 0.57 46.0 3.79e-01 94.7% 86.2%
4994543 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.56 44.0 2.81e-01 93.0% 86.6%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 43.0 3.91e-01 91.2% 72.5%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.54 42.0 4.07e-01 89.5% 83.1%
3995674 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.54e-01 91.2% 80.9%
3420364 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.53 42.0 3.24e-01 91.2% 56.6%
4927537 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 41.0 2.81e-01 87.7% 48.4%
3580968 10.40.1.1 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.53 41.0 3.07e-01 91.2% 37.0%
3526370 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.53 43.0 3.47e-01 94.7% 77.5%
4551221 11.1.1.46 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha-amylase_N 0.53 43.0 3.42e-01 93.0% 53.6%
4973722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.44e-01 89.5% 63.8%
3622545 10.40.1.1 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.52 40.0 3.06e-01 91.2% 38.1%
3927952 11.2.1.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.52 40.0 3.13e-01 91.2% 81.3%
3390499 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.52 39.0 3.16e-01 91.2% 62.9%
4461630 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.49e-01 96.5% 61.7%
3212135 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 38.0 2.91e-01 87.7% 84.8%