←Back to structures
MW822144.1__QWT29874.1__SEA_KIMJONGPHILL_93__00093
Bact-VirMW822144.1__QWT29874.1__SEA_KIMJONGPHILL_93__00093
Identity
- Accession:
- MW822144 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Taxonomy
TaxID: 2848886
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-87
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.79 | 64.0 | 5.70e-01 | 87.3% | 64.0% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.74 | 59.0 | 5.66e-01 | 89.1% | 76.2% |
| 2v8pA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.71 | 52.0 | 3.80e-01 | 80.0% | 62.6% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.69 | 61.0 | 4.69e-01 | 94.5% | 69.0% |
| 2i6xA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 52.0 | 4.79e-01 | 92.7% | 69.0% |
| 2o5iN07 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.63 | 56.0 | 4.34e-01 | 98.2% | 80.2% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.63 | 53.0 | 4.08e-01 | 100.0% | 70.3% |
| 3m6zA03 | 1.10.150.740 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 49.0 | 4.65e-01 | 96.4% | 72.9% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.60 | 53.0 | 4.08e-01 | 96.4% | 82.9% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.59 | 49.0 | 3.28e-01 | 92.7% | 39.0% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.57 | 43.0 | 3.07e-01 | 100.0% | 25.8% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 49.0 | 4.12e-01 | 92.7% | 79.5% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 41.0 | 3.86e-01 | 85.5% | 87.8% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.81e-01 | 96.4% | 84.5% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.51 | 39.0 | 3.56e-01 | 90.9% | 61.9% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.50 | 37.0 | 3.00e-01 | 85.5% | 49.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3737171 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.82 | 66.0 | 6.42e-01 | 87.3% | 78.3% |
| 3378995 | 108.1.1.111 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7952 | 0.82 | 60.0 | 6.02e-01 | 90.9% | 76.4% |
| 3737108 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.80 | 65.0 | 6.11e-01 | 87.3% | 73.8% |
| 3799615 | 509.1.1.2 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › CCM2_C | 0.79 | 65.0 | 5.23e-01 | 89.1% | 49.0% |
| 3246402 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.79 | 64.0 | 5.98e-01 | 85.5% | 73.8% |
| 143586 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.79 | 64.0 | 5.70e-01 | 87.3% | 64.0% |
| 3737312 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.78 | 64.0 | 5.69e-01 | 87.3% | 64.0% |
| 3662970 | 101.1.1.426 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SAGA-Tad1 | 0.78 | 60.0 | 5.69e-01 | 96.4% | 69.2% |
| 3801315 | 509.1.1.2 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › CCM2_C | 0.78 | 64.0 | 6.01e-01 | 89.1% | 73.8% |
| 3437288 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.77 | 63.0 | 5.62e-01 | 87.3% | 64.0% |
| 3822871 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.77 | 60.0 | 5.82e-01 | 96.4% | 75.0% |
| 3821967 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.75 | 63.0 | 5.64e-01 | 90.9% | 66.7% |
| 3802502 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.72 | 57.0 | 5.45e-01 | 87.3% | 73.8% |
| 3818442 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.72 | 63.0 | 5.50e-01 | 94.5% | 70.0% |
| 4024170 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.72 | 55.0 | 5.36e-01 | 81.8% | 75.0% |
| 3404899 | 509.1.1.13 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 | 0.72 | 57.0 | 5.27e-01 | 94.5% | 67.1% |
| 4112669 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.64 | 57.0 | 3.94e-01 | 98.2% | 61.7% |
| 4493491 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.64 | 57.0 | 3.38e-01 | 98.2% | 26.2% |
| 4887358 | 4958.1.1.4 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.63 | 56.0 | 3.97e-01 | 98.2% | 57.8% |
| 4376325 | 4958.1.1.2 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_4 | 0.63 | 52.0 | 3.86e-01 | 98.2% | 75.0% |
| 4357137 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.62 | 53.0 | 3.75e-01 | 100.0% | 64.9% |
| 5055565 | 192.15.1.224 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › SHOCT | 0.61 | 57.0 | 4.17e-01 | 100.0% | 81.5% |
| 3742303 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.59 | 47.0 | 3.29e-01 | 89.1% | 91.2% |
| 3208712 | 5043.1.1.9 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Rrn7_cyclin_N | 0.57 | 49.0 | 4.73e-01 | 100.0% | 84.4% |