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MW824370.1__QZI89807.1__MYOV002v2_p0102__00102

Bact-Vir

MW824370.1__QZI89807.1__MYOV002v2_p0102__00102

Identity

Accession:
MW824370 ↗
Kingdom:
phage

Quality

69.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Vibrio_phage_144E46.1

TaxID: 2859302

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 45.0 4.41e-01 100.0% 58.3%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.50e-01 100.0% 88.3%
3cxbA02 3.30.390.70 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein 0.64 45.0 3.60e-01 100.0% 38.7%
3duzA02 2.40.50.710 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 41.0 4.15e-01 71.4% 66.7%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 4.88e-01 100.0% 76.6%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.81e-01 100.0% 77.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.11e-01 100.0% 63.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.40e-01 100.0% 53.4%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 37.0 3.84e-01 100.0% 72.5%
4ia6B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 52.0 3.21e-01 100.0% 46.8%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 43.0 4.40e-01 100.0% 90.7%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 43.0 3.16e-01 87.5% 84.1%
2kxtA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.57 43.0 3.04e-01 82.1% 91.1%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.19e-01 100.0% 70.8%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 45.0 3.19e-01 92.9% 48.4%
5teaB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.56 45.0 3.38e-01 100.0% 66.7%
1ivyB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 43.0 2.56e-01 85.7% 54.7%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 34.0 3.07e-01 75.0% 39.1%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 37.0 3.53e-01 91.1% 60.3%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.53 43.0 3.34e-01 100.0% 39.1%
4at0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 2.83e-01 100.0% 57.6%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 35.0 3.56e-01 96.4% 71.9%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.98e-01 87.5% 96.9%
2r44A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.62e-01 75.0% 53.9%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.45e-01 92.9% 70.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4013635 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 44.0 2.79e-01 91.1% 13.2%
3980806 636.1.1.2 ↗ alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › Sif 0.63 45.0 3.12e-01 100.0% 22.2%
3909552 316.1.1.37 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › FKTN_N 0.62 55.0 3.70e-01 100.0% 51.6%
4545273 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.61 51.0 4.00e-01 100.0% 64.4%
3657113 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 3.64e-01 82.1% 40.8%
3376660 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 48.0 4.32e-01 92.9% 76.2%
4205423 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 37.0 3.42e-01 96.4% 50.7%
None — 0.57 49.0 3.02e-01 100.0% 62.0%
3585591 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.56 46.0 3.98e-01 92.9% 62.2%
3954203 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 45.0 4.25e-01 100.0% 76.0%
3798192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 46.0 3.06e-01 92.9% 24.3%
3997031 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.55 45.0 3.06e-01 92.9% 24.9%
3685235 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 40.0 2.44e-01 100.0% 12.7%
3664075 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.54 46.0 2.90e-01 100.0% 56.2%
5048115 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.53 45.0 3.86e-01 98.2% 61.1%
3376990 7579.1.1.20 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT 0.53 48.0 2.80e-01 100.0% 32.4%
3275868 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 45.0 4.05e-01 100.0% 68.8%
3918443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 29.0 3.17e-01 100.0% 64.4%
3258774 2003.1.2.63 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N, GMC_oxred_C, NAD_binding_8 0.52 43.0 2.65e-01 100.0% 56.2%
4436288 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.51 34.0 2.82e-01 100.0% 34.5%
5030911 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 40.0 3.74e-01 100.0% 71.1%
4052006 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.51 45.0 3.94e-01 100.0% 78.8%