←Back to structures

MW824370.1__QZI89869.1__MYOV002v2_p0164__00164

Bact-Vir

MW824370.1__QZI89869.1__MYOV002v2_p0164__00164

Identity

Accession:
MW824370 ↗
Kingdom:
phage

Quality

65.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Vibrio_phage_144E46.1

TaxID: 2859302

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-62
PDB
Domain cluster: rep: ON809764.1__WDS51485.1__SeF6a_171__00165__D59-109
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24224.2 best DUF7440 47.8 2.00e-12 98.3% 48.7%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hoiA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.62 46.0 3.27e-01 80.0% 50.3%
3s2kB01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 44.0 2.86e-01 76.7% 86.3%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 43.0 3.29e-01 80.0% 41.4%
3rlfF02 3.10.650.10 Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like 0.58 41.0 3.76e-01 75.0% 80.5%
7sulB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 43.0 2.77e-01 83.3% 41.1%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.58 39.0 2.45e-01 73.3% 49.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.55 38.0 3.23e-01 73.3% 45.0%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 43.0 3.73e-01 95.0% 97.2%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 39.0 2.55e-01 83.3% 25.9%
3it5G00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.52 42.0 3.21e-01 100.0% 90.0%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.51 37.0 3.40e-01 78.3% 74.7%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 43.0 3.57e-01 100.0% 76.5%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.84e-01 91.7% 82.8%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 35.0 3.07e-01 76.7% 85.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288229 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.68 46.0 3.46e-01 71.7% 98.7%
3416827 316.1.1.16 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DZF_N 0.60 44.0 3.09e-01 80.0% 35.8%
3865663 5.1.3.145 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b, DUF5050 0.57 42.0 2.83e-01 81.7% 36.5%
4956405 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 45.0 2.80e-01 93.3% 24.2%
4931271 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.55 38.0 2.65e-01 96.7% 21.0%
3959845 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.49e-01 85.0% 54.5%
5051120 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 40.0 2.74e-01 90.0% 46.8%
3636447 2484.1.1.39 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.52 37.0 2.30e-01 78.3% 40.7%
3718095 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.51 38.0 2.56e-01 83.3% 44.7%
1088604 11.1.1.311 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CueP 0.51 41.0 3.11e-01 95.0% 62.7%
4880691 109.4.1.76 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Menin 0.50 41.0 2.93e-01 98.3% 45.3%
3272078 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 43.0 2.83e-01 98.3% 91.8%
4933788 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.50 36.0 2.57e-01 78.3% 68.6%
D2 medium residues 157-196
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.86 76.0 7.33e-01 100.0% 91.3%
4cpgA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 39.0 3.26e-01 92.5% 39.1%
2pusA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 41.0 3.72e-01 97.5% 58.5%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 44.0 3.05e-01 100.0% 77.6%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.52 42.0 4.01e-01 97.5% 75.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3635200 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.91 79.0 7.13e-01 100.0% 70.9%
4021235 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.91 79.0 6.88e-01 100.0% 65.0%
3259450 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.74 60.0 5.86e-01 100.0% 88.9%
3623078 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 48.0 4.50e-01 80.0% 88.0%
3580620 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 43.0 2.79e-01 75.0% 52.0%
2570270 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.60 39.0 3.71e-01 100.0% 51.9%
3494170 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.58 44.0 2.79e-01 85.0% 32.3%
3391758 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 40.0 2.69e-01 72.5% 67.7%
3788462 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.58 45.0 2.71e-01 87.5% 45.6%
3944587 101.1.4.26 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DNA_meth_N 0.56 43.0 3.80e-01 97.5% 71.4%