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MW824370.1__QZI89902.1__MYOV002v2_p0197__00197

Bact-Vir

MW824370.1__QZI89902.1__MYOV002v2_p0197__00197

Identity

Accession:
MW824370 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Vibrio_phage_144E46.1

TaxID: 2859302

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-61
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.76 50.0 3.82e-01 100.0% 31.1%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.68 52.0 4.29e-01 83.9% 100.0%
6zxbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.66 43.0 3.17e-01 71.4% 25.7%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.65 59.0 3.84e-01 98.2% 49.8%
4o7iA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.64 50.0 3.58e-01 89.3% 69.8%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 3.56e-01 85.7% 68.1%
1vz0A01 3.90.1530.30 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › 0.60 46.0 4.43e-01 82.1% 90.5%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 51.0 3.69e-01 91.1% 34.5%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 51.0 3.84e-01 100.0% 93.6%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 41.0 2.79e-01 76.8% 86.3%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.22e-01 83.9% 74.0%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.32e-01 71.4% 97.2%
2qntA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 40.0 3.26e-01 85.7% 94.0%
6igmG01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 36.0 3.28e-01 75.0% 65.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3937187 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 49.0 3.88e-01 80.4% 46.4%
3229643 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 52.0 3.99e-01 87.5% 40.8%
3317525 7512.1.1.77 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N 0.63 46.0 3.07e-01 82.1% 20.8%
5060418 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 51.0 3.98e-01 89.3% 41.7%
4224821 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 51.0 4.00e-01 89.3% 43.5%
4981980 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 51.0 3.91e-01 98.2% 44.3%
3508781 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 46.0 3.98e-01 87.5% 67.8%
3704770 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.57 48.0 3.70e-01 94.6% 50.0%
3640563 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 38.0 3.52e-01 71.4% 89.3%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 44.0 3.41e-01 89.3% 38.5%
4032077 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.54 37.0 3.38e-01 73.2% 82.5%
3423772 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.52 41.0 3.28e-01 87.5% 48.7%
D2 high residues 67-174
PDB
Domain cluster: rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3357352 207.1.1.77 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBD 0.65 46.0 3.52e-01 74.1% 43.1%
3717832 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.55 50.0 3.56e-01 100.0% 58.4%
3625834 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.45e-01 86.1% 72.6%
3698149 7504.1.1.5 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › DUF5427 0.50 40.0 3.16e-01 84.3% 69.1%
5059969 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 33.0 3.40e-01 85.2% 71.0%