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MW824375.1__QZI90452.1__MYOV003v1_p0128__00128
Bact-VirMW824375.1__QZI90452.1__MYOV003v1_p0128__00128
Identity
- Accession:
- MW824375 ↗
- Kingdom:
- phage
Quality
74.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Vibrio_phage_207E48.1
TaxID: 2859310
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 245-338
Domain cluster:
rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 47.0 | 4.53e-01 | 89.4% | 93.3% |
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 34.0 | 2.29e-01 | 89.4% | 16.0% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 46.0 | 4.10e-01 | 97.9% | 72.2% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 46.0 | 3.95e-01 | 98.9% | 66.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3563383 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.84 | 78.0 | 6.50e-01 | 100.0% | 66.5% |
| 3275547 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.83 | 62.0 | 5.83e-01 | 77.7% | 80.0% |
| 3273707 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.82 | 64.0 | 5.80e-01 | 83.0% | 72.0% |
| 3225281 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.79 | 74.0 | 6.20e-01 | 100.0% | 62.7% |
| 3944436 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.77 | 69.0 | 6.51e-01 | 100.0% | 82.7% |
| 3618364 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.76 | 60.0 | 5.55e-01 | 81.9% | 67.0% |
| 3649913 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.66 | 47.0 | 3.87e-01 | 96.8% | 41.2% |
| 3215753 | 3226.1.1.1 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease | 0.55 | 48.0 | 3.10e-01 | 98.9% | 92.3% |
| 3791945 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.52 | 35.0 | 2.68e-01 | 96.8% | 29.3% |
| 3925104 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.51 | 44.0 | 2.86e-01 | 96.8% | 92.7% |
| 5074119 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.51 | 40.0 | 2.94e-01 | 83.0% | 94.9% |
| 3380612 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.50 | 41.0 | 3.60e-01 | 89.4% | 59.3% |
| 3775826 | 4016.1.1.0 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase | 0.50 | 39.0 | 3.35e-01 | 81.9% | 64.8% |
D2
medium
residues 57-102
D3
medium
residues 105-190
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4asmB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 50.0 | 3.35e-01 | 93.0% | 73.7% |
| 6aiiA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 47.0 | 3.21e-01 | 87.2% | 72.1% |
| 3witA00 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.58 | 40.0 | 4.56e-01 | 81.4% | 96.9% |
| 2ovrB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 48.0 | 3.25e-01 | 100.0% | 56.9% |
| 2f2hA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.53 | 42.0 | 3.08e-01 | 87.2% | 81.6% |
| 2od0A00 | 3.30.1460.30 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone | 0.51 | 30.0 | 2.92e-01 | 74.4% | 47.6% |
| 3ohsX02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 36.0 | 2.83e-01 | 75.6% | 43.8% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 37.0 | 3.27e-01 | 81.4% | 71.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 999859 | 79.1.1.12 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp138_C | 0.73 | 51.0 | 4.73e-01 | 79.1% | 57.9% |
| 3585029 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.65 | 57.0 | 3.27e-01 | 100.0% | 38.3% |
| 3654105 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.61 | 46.0 | 3.32e-01 | 80.2% | 45.9% |
| 4108632 | 10.1.1.74 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275 | 0.60 | 50.0 | 3.33e-01 | 91.9% | 73.3% |
| 5065809 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.57 | 42.0 | 3.51e-01 | 80.2% | 62.5% |
| 3934044 | 5.1.11.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 | 0.56 | 48.0 | 3.25e-01 | 97.7% | 52.3% |
| 3720204 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 48.0 | 3.07e-01 | 98.8% | 46.5% |
| 3787812 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 48.0 | 3.11e-01 | 98.8% | 44.1% |
| 5000165 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.54 | 41.0 | 2.83e-01 | 82.6% | 66.5% |
| 4484870 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.54 | 38.0 | 3.22e-01 | 74.4% | 89.7% |
| 3930593 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 39.0 | 2.75e-01 | 84.9% | 53.1% |
| 4642457 | 12.3.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF28395 | 0.51 | 43.0 | 2.99e-01 | 96.5% | 60.6% |