←Back to structures

MW824377.1__QZI87274.1__MYOV011v1_p0002__00002

Bact-Vir

MW824377.1__QZI87274.1__MYOV011v1_p0002__00002

Identity

Accession:
MW824377 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Vibrio_phage_6E35.1a

TaxID: 2859340

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00151__D39-111
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 57.0 5.26e-01 98.5% 64.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 58.0 5.91e-01 100.0% 87.9%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 57.0 5.48e-01 100.0% 74.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.96e-01 100.0% 96.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 6.12e-01 100.0% 95.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 6.09e-01 100.0% 93.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.09e-01 100.0% 74.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.02e-01 100.0% 73.6%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.30e-01 100.0% 53.3%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.93e-01 98.5% 92.5%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.26e-01 98.5% 92.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 44.0 5.02e-01 98.5% 93.8%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 5.46e-01 98.5% 100.0%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 53.0 5.22e-01 100.0% 78.4%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.81e-01 100.0% 95.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.75e-01 95.6% 79.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.80e-01 98.5% 75.8%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.57e-01 100.0% 84.9%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.69e-01 100.0% 75.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.79e-01 98.5% 83.9%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.83e-01 98.5% 74.3%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 4.30e-01 98.5% 48.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.64e-01 100.0% 91.2%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.87e-01 100.0% 87.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.63e-01 100.0% 73.5%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 58.0 5.90e-01 98.5% 100.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.96e-01 100.0% 87.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.63 50.0 5.19e-01 100.0% 93.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 42.0 4.60e-01 98.5% 88.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.51e-01 100.0% 75.4%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 44.0 4.68e-01 94.1% 89.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 4.55e-01 85.3% 85.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.69e-01 100.0% 87.1%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 52.0 4.21e-01 100.0% 49.2%
2kssA01 2.30.30.630 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 5.24e-01 98.5% 100.0%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.64e-01 94.1% 86.9%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.30e-01 100.0% 85.5%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 5.02e-01 98.5% 94.5%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.59 44.0 4.48e-01 100.0% 81.8%
1vwxZ00 2.30.30.770 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.16e-01 100.0% 58.5%
2ls0101 2.40.50.670 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme 0.58 47.0 4.07e-01 92.6% 93.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.57e-01 100.0% 81.1%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 48.0 4.55e-01 100.0% 78.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 4.23e-01 89.7% 97.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.89e-01 100.0% 67.5%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.98e-01 100.0% 84.5%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 42.0 2.87e-01 86.8% 38.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 39.0 4.17e-01 100.0% 89.8%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.83e-01 82.4% 67.9%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.91e-01 82.4% 72.7%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 4.03e-01 80.9% 85.9%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 3.30e-01 79.4% 96.5%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.57e-01 92.6% 82.3%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.52 38.0 3.58e-01 76.5% 91.5%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.76e-01 82.4% 75.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.84e-01 82.4% 82.1%
1f1uA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 40.0 3.19e-01 89.7% 81.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 36.0 3.62e-01 83.8% 77.6%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 47.0 5.15e-01 100.0% 80.0%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.74 52.0 5.39e-01 100.0% 79.7%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 58.0 6.11e-01 100.0% 96.7%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.71 50.0 5.07e-01 100.0% 73.9%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.51e-01 100.0% 84.6%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 52.0 5.47e-01 100.0% 88.3%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.39e-01 98.5% 90.9%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.70 53.0 5.44e-01 100.0% 84.6%
3521739 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 55.0 5.10e-01 100.0% 67.1%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 45.0 4.85e-01 100.0% 80.0%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.37e-01 98.5% 96.0%
3698762 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.70 50.0 4.41e-01 100.0% 50.5%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.14e-01 100.0% 80.0%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.70 56.0 5.72e-01 100.0% 92.3%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 57.0 5.67e-01 100.0% 85.7%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.29e-01 100.0% 90.9%
3523979 604.12.1.118 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.70 47.0 4.96e-01 100.0% 80.0%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.69 51.0 4.47e-01 100.0% 53.0%
4003181 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 56.0 5.91e-01 98.5% 98.3%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.05e-01 100.0% 78.5%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.69 47.0 4.87e-01 100.0% 75.4%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.62e-01 98.5% 65.3%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 5.10e-01 100.0% 85.0%
3701345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.71e-01 98.5% 86.3%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.59e-01 100.0% 90.8%
1821014 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.68 55.0 5.66e-01 100.0% 93.8%
3518475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.55e-01 100.0% 67.1%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.71e-01 100.0% 63.5%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.68 60.0 6.00e-01 100.0% 98.6%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.81e-01 98.5% 72.9%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.56e-01 98.5% 70.8%
3025579 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 54.0 5.72e-01 100.0% 100.0%
4943273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.14e-01 100.0% 83.1%
4132516 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.68 53.0 5.05e-01 100.0% 72.5%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.68 44.0 3.16e-01 98.5% 21.9%
5075469 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.68 51.0 5.20e-01 100.0% 84.6%
3397846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.77e-01 98.5% 83.6%
4386715 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 59.0 5.51e-01 98.5% 88.2%
4215717 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.07e-01 100.0% 81.2%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.66 44.0 4.73e-01 98.5% 83.6%
5052257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.64e-01 95.6% 78.3%
3855038 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.66 45.0 3.49e-01 98.5% 30.6%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.66 45.0 4.24e-01 98.5% 57.6%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.66 45.0 4.74e-01 98.5% 83.1%
5031165 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.65 50.0 4.96e-01 100.0% 80.0%
3232054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.18e-01 100.0% 53.0%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.64 57.0 5.40e-01 100.0% 88.7%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.21e-01 98.5% 92.2%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.64 45.0 4.66e-01 98.5% 80.0%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.63 47.0 4.70e-01 100.0% 80.0%
4091791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.22e-01 95.6% 85.3%
3761318 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.62 47.0 4.71e-01 100.0% 82.9%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.90e-01 100.0% 93.3%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.61 47.0 4.64e-01 100.0% 78.7%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.61 47.0 4.86e-01 100.0% 90.8%
4020073 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.67e-01 98.5% 82.9%
5052256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.21e-01 98.5% 63.2%
5063311 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.58 37.0 4.16e-01 97.1% 97.8%
4041866 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.58 44.0 4.49e-01 89.7% 86.2%
3839839 4.1.1.84 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_7 0.57 51.0 4.64e-01 100.0% 84.4%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.57 49.0 4.55e-01 100.0% 84.4%
3210606 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.57 46.0 3.88e-01 94.1% 87.2%
3481770 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.57 43.0 4.15e-01 100.0% 71.2%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.56 40.0 3.94e-01 100.0% 69.3%
4339993 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.56 40.0 3.68e-01 100.0% 57.8%
3581336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.16e-01 100.0% 64.5%
3584571 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.54 46.0 3.15e-01 100.0% 27.2%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.54 43.0 4.43e-01 100.0% 95.4%
3185323 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.54 48.0 4.08e-01 100.0% 70.9%
3217617 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 3.58e-01 91.2% 92.0%
3653284 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 40.0 3.57e-01 86.8% 88.6%
3679362 4.1.1.351 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.52 45.0 4.28e-01 100.0% 97.6%
3654790 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 3.96e-01 89.7% 88.3%
3430888 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.51 41.0 2.53e-01 95.6% 61.4%