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MW824377.1__QZI87571.1__MYOV011v1_p0304__00303

Bact-Vir

MW824377.1__QZI87571.1__MYOV011v1_p0304__00303

Identity

Accession:
MW824377 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Vibrio_phage_6E35.1a

TaxID: 2859340

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-81
PDB
Domain cluster: rep: OY979482.1__CAK6605589.1__K4PH164_LOCUS30__00030__D13-83
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6cngA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.71 51.0 4.28e-01 76.3% 99.2%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.67 46.0 3.51e-01 81.6% 30.0%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 55.0 4.16e-01 90.8% 38.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.66 56.0 5.52e-01 94.7% 98.8%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.63 53.0 5.02e-01 98.7% 78.9%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 51.0 3.44e-01 90.8% 43.5%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.61 44.0 3.10e-01 76.3% 47.6%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.60 46.0 4.10e-01 82.9% 58.7%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 51.0 4.43e-01 97.4% 86.8%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 47.0 3.21e-01 88.2% 44.6%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.46e-01 72.4% 43.8%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 42.0 3.40e-01 78.9% 66.2%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.56 41.0 3.14e-01 78.9% 37.0%
1ro5A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 42.0 3.16e-01 81.6% 69.0%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 42.0 3.29e-01 82.9% 80.2%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 48.0 3.71e-01 100.0% 97.2%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 40.0 3.16e-01 78.9% 69.4%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.54 44.0 3.70e-01 88.2% 64.6%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 40.0 3.15e-01 78.9% 64.4%
1xebA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 39.0 3.22e-01 78.9% 69.1%
6wqbA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 40.0 3.32e-01 81.6% 66.4%
3jvnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 39.0 3.34e-01 78.9% 85.2%
2gqwA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 43.0 4.12e-01 94.7% 77.5%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.52 38.0 3.83e-01 77.6% 79.5%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.78e-01 84.2% 69.7%
3ld2B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.10e-01 80.3% 63.0%
2ae6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.15e-01 80.3% 60.5%
2hb5A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 42.0 3.44e-01 100.0% 46.0%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.24e-01 76.3% 71.0%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 2.78e-01 92.1% 41.4%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 3.27e-01 77.6% 90.8%
2l5lA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 43.0 3.62e-01 96.1% 94.9%
2jdcA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 3.19e-01 82.9% 80.0%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 2.72e-01 81.6% 38.9%
3f8kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 38.0 3.18e-01 78.9% 65.6%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.50 37.0 3.40e-01 82.9% 77.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3763863 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.78 59.0 5.69e-01 86.8% 71.8%
3905680 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.75 56.0 3.53e-01 86.8% 15.6%
1189179 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.73 61.0 4.55e-01 92.1% 40.4%
3947082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 61.0 5.74e-01 93.4% 100.0%
3833570 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.70 49.0 3.43e-01 73.7% 58.3%
3238997 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 47.0 3.91e-01 73.7% 41.4%
3233750 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.65 49.0 4.81e-01 81.6% 90.6%
3736283 4295.1.1.0 ↗ beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.65 48.0 3.46e-01 76.3% 69.5%
4001680 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 44.0 4.26e-01 71.1% 61.4%
4977734 4295.1.1.1 ↗ beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › ADC 0.64 46.0 3.28e-01 76.3% 46.7%
3226595 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.64 51.0 4.23e-01 89.5% 49.7%
1290125 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.62 51.0 3.81e-01 90.8% 67.4%
5076727 4295.1.1.1 ↗ beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › ADC 0.61 45.0 3.30e-01 80.3% 80.0%
3226497 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.61 49.0 4.36e-01 90.8% 60.9%
899 4295.1.1.1 ↗ beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › ADC 0.60 48.0 3.42e-01 89.5% 76.4%
1296460 216.2.1.1 ↗ a+b two layers › UBC-like › Thermo-DBP-RP2 C-terminal domain › Thermo-DBP-RP2 C-terminal domain › Thermo-DBP 0.59 50.0 4.57e-01 100.0% 74.5%
3302412 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 45.0 3.05e-01 85.5% 33.0%
4312097 295.1.1.15 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.57 40.0 3.06e-01 73.7% 85.7%
5056596 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 44.0 2.81e-01 82.9% 25.4%
4944450 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.56 46.0 3.66e-01 93.4% 88.1%
4975431 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 42.0 4.02e-01 81.6% 68.9%
4998670 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 39.0 3.72e-01 73.7% 65.6%
3979195 274.1.1.35 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.55 44.0 3.74e-01 86.8% 52.8%
164398 244.2.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C 0.54 45.0 4.10e-01 97.4% 69.6%
5004750 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 40.0 2.59e-01 78.9% 29.4%
3287912 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.53 38.0 3.23e-01 77.6% 61.4%
4181736 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.51 45.0 3.55e-01 100.0% 65.5%
4538067 244.2.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.51 38.0 4.22e-01 85.5% 100.0%
3940526 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.51 43.0 4.31e-01 94.7% 91.3%
3262446 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.51 38.0 3.58e-01 88.2% 64.5%
3407225 244.2.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C 0.50 42.0 3.89e-01 94.7% 73.5%