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MW824377.1__QZI87616.1__MYOV011v1_p0349__00348

Bact-Vir

MW824377.1__QZI87616.1__MYOV011v1_p0349__00348

Identity

Accession:
MW824377 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Vibrio_phage_6E35.1a

TaxID: 2859340

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.60 49.0 4.04e-01 94.7% 52.3%
4mkmA01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 52.0 4.20e-01 98.7% 61.0%
2olgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 52.0 4.36e-01 98.7% 82.9%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 48.0 3.93e-01 96.1% 57.1%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 51.0 4.24e-01 100.0% 82.7%
6kxkB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 50.0 4.15e-01 100.0% 58.5%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 35.0 2.86e-01 86.8% 35.0%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.55 49.0 3.96e-01 100.0% 86.6%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 49.0 3.32e-01 100.0% 31.7%
1iuhA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.55 46.0 3.62e-01 98.7% 98.4%
1etb200 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.55 49.0 4.28e-01 100.0% 82.1%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 49.0 3.40e-01 100.0% 35.9%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.55 41.0 3.52e-01 100.0% 51.3%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.91e-01 94.7% 68.3%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.07e-01 89.5% 74.5%
1tvdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.06e-01 94.7% 70.7%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.29e-01 100.0% 40.3%
5a2fA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.12e-01 94.7% 73.6%
5eb9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.02e-01 94.7% 71.4%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 47.0 3.46e-01 100.0% 84.8%
3orqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 47.0 3.41e-01 100.0% 76.3%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 46.0 3.51e-01 100.0% 83.0%
3omzA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.98e-01 92.1% 76.7%
4e4tA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 46.0 3.42e-01 100.0% 85.6%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 46.0 3.47e-01 100.0% 84.9%
7kseA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 40.0 3.35e-01 88.2% 87.0%
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 44.0 3.50e-01 97.4% 58.9%
1hw5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 3.12e-01 76.3% 69.0%
4p2qE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.83e-01 94.7% 70.7%
2m2dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.81e-01 94.7% 67.8%
7dryA01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 44.0 3.41e-01 100.0% 55.4%
1js8B02 2.60.310.10 Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain 0.51 44.0 4.04e-01 100.0% 76.2%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.84e-01 94.7% 75.0%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 43.0 3.06e-01 97.4% 66.7%
3iwzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 3.01e-01 75.0% 69.4%
2z69B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 2.86e-01 98.7% 36.7%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.50 45.0 3.93e-01 100.0% 86.8%
1bvuA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.50 42.0 3.55e-01 100.0% 57.5%
4gjtC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.78e-01 94.7% 73.2%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 42.0 3.49e-01 100.0% 69.9%
4ev0D01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 2.91e-01 100.0% 40.9%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 3.05e-01 100.0% 46.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508713 382.1.1.25 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.67 50.0 4.36e-01 86.8% 51.7%
4443054 3115.1.1.9 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.67 50.0 4.35e-01 86.8% 51.7%
3740580 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 48.0 3.64e-01 76.3% 86.9%
3648651 221.1.1.111 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc 0.64 55.0 4.60e-01 94.7% 81.5%
5053400 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 43.0 3.63e-01 71.1% 87.7%
3240264 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 42.0 3.81e-01 86.8% 51.4%
3741841 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 53.0 4.59e-01 98.7% 63.5%
3635442 4139.1.1.1 ↗ a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 0.60 52.0 4.36e-01 100.0% 58.3%
3454563 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 44.0 4.41e-01 100.0% 75.0%
4960453 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 54.0 4.84e-01 100.0% 72.4%
11195 2484.1.1.56 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR 0.59 46.0 4.34e-01 88.2% 70.7%
4021064 10.9.1.0 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin 0.58 49.0 4.42e-01 92.1% 83.8%
3947630 2484.1.1.56 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR 0.57 48.0 3.07e-01 100.0% 46.3%
3949948 10.32.1.46 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Arabino_trans_C 0.56 50.0 3.59e-01 100.0% 38.7%
4963598 1.1.7.150 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26503 0.56 39.0 4.00e-01 86.8% 74.7%
3799804 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.56 47.0 3.54e-01 96.1% 40.7%
4965895 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 46.0 4.19e-01 100.0% 68.0%
3702626 206.1.3.46 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_IQCH 0.56 50.0 3.42e-01 98.7% 38.0%
4856576 11.1.4.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Transthyretin 0.55 50.0 4.37e-01 100.0% 83.2%
3937407 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.55 50.0 4.30e-01 100.0% 69.2%
5045521 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.34e-01 76.3% 84.4%
3862828 206.1.3.46 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_IQCH 0.55 49.0 3.11e-01 98.7% 25.6%
3778873 206.1.3.46 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_IQCH 0.55 49.0 3.36e-01 98.7% 36.9%
5004154 11.1.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.55 42.0 3.69e-01 94.7% 54.8%
5062627 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 48.0 4.67e-01 100.0% 87.1%
3499000 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 49.0 3.27e-01 98.7% 32.5%
3769768 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 48.0 3.03e-01 98.7% 30.6%
4348908 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.54 49.0 3.22e-01 98.7% 29.5%
3276474 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 48.0 3.82e-01 100.0% 49.0%
4029036 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 49.0 4.62e-01 100.0% 100.0%
1097207 10.9.1.2 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Haemocyan_bet_s 0.54 48.0 4.28e-01 100.0% 72.1%
3579486 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 40.0 3.34e-01 100.0% 44.4%
4157506 11.1.1.100 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set,C2-set_2 0.54 47.0 3.27e-01 94.7% 34.5%
4186191 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.54 48.0 3.30e-01 100.0% 57.4%
3413760 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 47.0 3.84e-01 100.0% 66.0%
3932246 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.04e-01 94.7% 67.0%
4296898 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.07e-01 94.7% 70.9%
3854647 206.1.3.41 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter 0.53 46.0 2.72e-01 98.7% 18.8%
3649430 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 47.0 4.15e-01 100.0% 78.3%
3927298 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 47.0 3.81e-01 100.0% 82.0%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.53 37.0 3.97e-01 86.8% 93.3%
3951116 206.1.3.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp 0.52 46.0 3.31e-01 98.7% 42.3%
3913887 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 45.0 3.98e-01 94.7% 71.8%
4947513 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.52 46.0 3.20e-01 98.7% 46.0%
3932481 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.52 44.0 3.74e-01 97.4% 74.6%
3885160 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 45.0 4.03e-01 94.7% 70.5%
3249625 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.52 44.0 2.77e-01 100.0% 36.6%
4966381 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 43.0 2.84e-01 94.7% 29.7%
3903682 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 45.0 3.89e-01 94.7% 70.4%
3254341 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.51 36.0 2.47e-01 72.4% 29.1%
3873369 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.51 41.0 3.86e-01 85.5% 73.3%
3488824 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.50 40.0 2.59e-01 86.8% 31.1%
None — 0.50 45.0 3.22e-01 100.0% 46.8%
4133110 2494.1.1.1 ↗ a/b three-layered sandwiches › DTD-like › DTD-like (Pfam 02580) › DTD-like (Pfam 02580) › Tyr_Deacylase 0.50 41.0 3.44e-01 98.7% 80.6%