Back to structures

MW824379.1__QZI90703.1__MYOV020v1_p0077__00077

Bact-Vir

MW824379.1__QZI90703.1__MYOV020v1_p0077__00077

Identity

Accession:
MW824379 ↗
Kingdom:
phage

Quality

59.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 75-128
PDB
D2 medium residues 131-174
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c5sA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.72 57.0 3.89e-01 100.0% 24.3%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 48.0 2.88e-01 100.0% 11.2%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.67 55.0 4.78e-01 100.0% 59.2%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.67 55.0 4.53e-01 100.0% 87.6%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.66 56.0 4.96e-01 100.0% 76.1%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.66 51.0 4.24e-01 100.0% 45.7%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.64 52.0 3.58e-01 100.0% 26.5%
1oyiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.16e-01 86.4% 74.2%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 4.20e-01 93.2% 62.7%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 3.75e-01 95.5% 50.5%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.60 48.0 3.84e-01 100.0% 43.4%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.59 49.0 4.55e-01 100.0% 81.4%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.59 48.0 3.44e-01 95.5% 81.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.87e-01 97.7% 56.1%
2in3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 42.0 3.44e-01 77.3% 45.7%
1vw4F01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.58 49.0 3.94e-01 100.0% 84.9%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.58e-01 86.4% 47.3%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.63e-01 88.6% 86.0%
4h7uA02 3.30.560.10 Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3 0.58 49.0 3.07e-01 100.0% 63.7%
2yx1A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 45.0 4.09e-01 93.2% 71.2%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.42e-01 95.5% 33.6%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.58 48.0 3.36e-01 97.7% 62.1%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.46e-01 86.4% 73.3%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.78e-01 100.0% 49.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.65e-01 95.5% 84.5%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 41.0 2.85e-01 77.3% 31.7%
1sp8C02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 42.0 2.91e-01 95.5% 50.2%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.60e-01 84.1% 70.7%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.56 51.0 3.89e-01 100.0% 77.7%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.45e-01 93.2% 45.2%
2hgcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.54e-01 86.4% 51.3%
4hv0C00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.54 44.0 3.47e-01 88.6% 51.7%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.54 46.0 3.36e-01 100.0% 82.0%
7wntA02 3.10.20.580 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 36.0 3.11e-01 79.5% 41.0%
4chuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.03e-01 88.6% 34.9%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.53 39.0 3.20e-01 84.1% 78.0%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.52 38.0 3.44e-01 77.3% 74.6%
1nd7A01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.52 40.0 2.86e-01 100.0% 24.9%
2xzmT00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 2.94e-01 100.0% 82.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3696335 327.11.2.50 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF26118 0.76 65.0 6.05e-01 100.0% 76.4%
3690887 101.1.9.87 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF26118 0.75 62.0 5.76e-01 100.0% 74.5%
5042104 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.74 59.0 4.89e-01 97.7% 50.0%
5446 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.72 57.0 4.96e-01 100.0% 56.9%
4987705 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.71 57.0 4.77e-01 100.0% 50.0%
4937798 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.69 57.0 4.66e-01 100.0% 49.4%
3799886 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.68 54.0 4.88e-01 100.0% 70.0%
4890712 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.68 54.0 5.12e-01 100.0% 76.4%
5035614 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 54.0 5.00e-01 100.0% 70.0%
3928208 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.67 53.0 4.67e-01 100.0% 64.0%
5028902 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.66 50.0 4.37e-01 97.7% 52.0%
3821553 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 55.0 5.31e-01 95.5% 96.0%
4652155 304.48.1.4 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.66 53.0 3.52e-01 100.0% 21.4%
4561700 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.64 49.0 3.93e-01 84.1% 55.6%
3609850 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.64 53.0 3.52e-01 100.0% 25.4%
3595902 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.63 52.0 3.47e-01 100.0% 26.0%
4967161 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.00e-01 86.4% 60.0%
5029837 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 3.82e-01 84.1% 54.1%
3920054 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.62 50.0 4.43e-01 100.0% 60.0%
5000514 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.61 49.0 4.14e-01 100.0% 52.3%
4140374 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.61 48.0 4.11e-01 100.0% 52.9%
1918436 6051.5.1.1 alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N 0.61 48.0 4.55e-01 100.0% 72.9%
4096141 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 47.0 3.80e-01 88.6% 57.8%
4992016 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.60 43.0 3.14e-01 100.0% 25.4%
4993096 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 3.60e-01 77.3% 100.0%
5029366 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.73e-01 86.4% 52.9%
3911302 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 49.0 4.45e-01 100.0% 76.9%
4030543 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.59 46.0 3.29e-01 100.0% 49.7%
4948233 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.02e-01 100.0% 54.7%
3499387 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.59 43.0 3.42e-01 86.4% 48.2%
4951675 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.59 48.0 3.73e-01 93.2% 51.0%
5074106 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 51.0 4.00e-01 100.0% 56.8%
4940859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 3.60e-01 86.4% 47.8%
3247951 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.58 42.0 3.32e-01 95.5% 31.5%
4967461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 51.0 3.98e-01 100.0% 55.8%
3786773 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.57 49.0 3.56e-01 100.0% 81.5%
2602 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.57 45.0 3.43e-01 95.5% 41.8%
5049142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 3.16e-01 86.4% 59.2%
4940555 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 41.0 2.66e-01 84.1% 32.2%
5030252 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 45.0 3.52e-01 90.9% 80.0%
5035255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 3.66e-01 93.2% 94.7%
5030237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.56e-01 84.1% 55.0%
4928978 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.72e-01 97.7% 54.7%
3937537 3755.3.1.462 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Pinin_SDK_memA 0.56 45.0 2.85e-01 100.0% 17.3%
5079818 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.76e-01 97.7% 96.7%
3287147 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.56 44.0 3.16e-01 100.0% 78.2%
4979509 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 3.79e-01 100.0% 91.6%
4068860 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.55 46.0 3.26e-01 88.6% 35.0%
4956853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.47e-01 90.9% 45.9%
4996058 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 45.0 3.39e-01 97.7% 43.5%
3289961 101.1.2.32 alpha arrays › HTH › HTH › winged helix domain › Rrf2 0.54 37.0 3.01e-01 77.3% 73.1%
5081376 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.53 40.0 3.65e-01 93.2% 60.0%
3593675 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.08e-01 100.0% 71.2%
3964477 101.1.2.32 alpha arrays › HTH › HTH › winged helix domain › Rrf2 0.53 40.0 2.99e-01 93.2% 29.6%
5031012 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.33e-01 100.0% 86.7%
4959097 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 41.0 3.44e-01 86.4% 54.7%
4053630 101.1.2.32 alpha arrays › HTH › HTH › winged helix domain › Rrf2 0.52 41.0 2.96e-01 90.9% 30.0%
5056814 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.52 44.0 2.67e-01 97.7% 14.1%
4928469 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.33e-01 90.9% 98.8%
4992529 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.46e-01 100.0% 96.7%
5017587 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.36e-01 100.0% 83.5%