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MW824382.1__QZI90896.1__MYOV064v1_p0046__00046

Bact-Vir

MW824382.1__QZI90896.1__MYOV064v1_p0046__00046

Identity

Accession:
MW824382 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_PS15B.4

TaxID: 2859356

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-112
PDB
Domain cluster: rep: MK387337.2__QAU04470.1__Va1_069__00027__D8-101
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qdlA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 21.0 2.67e-01 90.6% 56.5%
D2 medium residues 182-239
PDB
Domain cluster: rep: OX241575.1__CAH9016878.1__VP120E341_P0092__00092__D86-141
D3 medium residues 242-291
PDB
Domain cluster: rep: MG592484.1__AUR88240.1__NVP1111A_46__00046__D141-188
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ertA01 1.10.490.160 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.83 73.0 5.06e-01 98.0% 39.9%
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.73 41.0 4.32e-01 90.0% 60.9%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.69 58.0 4.09e-01 96.0% 30.3%
2oqmB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.68 59.0 4.11e-01 100.0% 92.9%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.68 50.0 4.42e-01 80.0% 62.2%
2vzcB00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.65 56.0 4.23e-01 100.0% 90.5%
3vkgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.64 56.0 4.37e-01 100.0% 50.0%
3iylB02 1.10.2050.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 0.62 54.0 3.98e-01 100.0% 54.5%
6wmrS01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 41.0 3.76e-01 74.0% 80.0%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 50.0 3.40e-01 96.0% 31.8%
1wncB00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 52.0 4.29e-01 98.0% 60.5%
2jnsA01 1.20.1270.220 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 44.0 3.85e-01 90.0% 71.6%
3ha2A00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 43.0 3.02e-01 90.0% 87.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3648942 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.79 53.0 3.64e-01 70.0% 33.5%
3693675 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 51.0 3.68e-01 82.0% 25.2%
3990287 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 50.0 3.09e-01 70.0% 17.1%
4973214 2008.1.1.210 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27324 0.72 62.0 4.18e-01 96.0% 28.9%
3448770 632.7.1.25 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 0.71 53.0 4.72e-01 80.0% 57.1%
3715298 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.70 58.0 4.45e-01 100.0% 39.1%
3348810 632.7.1.25 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 0.68 51.0 4.10e-01 80.0% 42.1%
3337031 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 49.0 3.30e-01 84.0% 62.2%
3499119 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.60 52.0 3.25e-01 96.0% 22.2%
3578099 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.60 49.0 4.80e-01 94.0% 90.9%
4206404 103.4.1.26 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Rod-binding 0.59 54.0 4.32e-01 100.0% 52.6%
3893414 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.59 47.0 3.62e-01 96.0% 41.0%
5017280 2002.1.1.172 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C 0.58 46.0 2.89e-01 88.0% 23.1%
3692550 3525.1.1.1 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.57 45.0 4.11e-01 90.0% 87.1%
3390239 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.57 46.0 4.23e-01 90.0% 92.3%
3584864 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.54 51.0 3.23e-01 100.0% 29.3%
4338726 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.53 44.0 4.14e-01 98.0% 96.9%