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MW824387.1__QZI91224.1__PODOV044v1_p0041__00041

Bact-Vir

MW824387.1__QZI91224.1__PODOV044v1_p0041__00041

Identity

Accession:
MW824387 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-76
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26890.1 best Phage_HP1_YO09 29.7 9.40e-07 93.2% 79.0%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.64e-01 82.2% 100.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 39.0 4.28e-01 74.0% 73.8%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 45.0 4.22e-01 74.0% 82.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 50.0 5.00e-01 83.6% 84.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.96e-01 90.4% 95.2%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.95e-01 98.6% 84.8%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 5.23e-01 100.0% 97.5%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.95e-01 82.2% 100.0%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.60 46.0 4.23e-01 82.2% 89.2%
1pybA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.66e-01 74.0% 81.3%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.98e-01 74.0% 89.0%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.64e-01 74.0% 79.2%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.65e-01 74.0% 76.5%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 45.0 3.99e-01 91.8% 91.2%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 46.0 4.11e-01 93.2% 84.9%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.82e-01 86.3% 32.6%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.43e-01 72.6% 80.0%
5itqA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.55 45.0 3.76e-01 91.8% 71.2%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.39e-01 74.0% 80.2%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 41.0 2.86e-01 84.9% 66.5%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 41.0 2.90e-01 86.3% 69.8%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 40.0 2.66e-01 84.9% 82.5%
2kjkA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 39.0 3.61e-01 80.8% 85.0%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 45.0 3.82e-01 97.3% 82.3%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.27e-01 100.0% 61.6%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 37.0 2.79e-01 75.3% 41.8%
2zpmA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 39.0 3.73e-01 79.5% 100.0%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 35.0 3.10e-01 71.2% 80.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.72 54.0 5.39e-01 93.2% 77.3%
4961666 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 36.0 3.01e-01 71.2% 30.0%
3593768 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.71e-01 84.9% 66.3%
3933230 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.64 44.0 3.66e-01 71.2% 67.7%
3758536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 49.0 5.07e-01 87.7% 87.1%
3926535 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.62 43.0 3.62e-01 71.2% 69.6%
5032977 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 5.09e-01 94.5% 91.3%
4538497 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 42.0 3.76e-01 72.6% 80.0%
4929001 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.90e-01 86.3% 96.9%
5012551 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 41.0 4.02e-01 72.6% 83.7%
300261 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 41.0 3.63e-01 72.6% 78.5%
4152172 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 41.0 3.63e-01 72.6% 77.1%
4945664 2.1.1.357 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA-synt_2 0.59 41.0 3.70e-01 72.6% 81.0%
3743760 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.58 42.0 3.74e-01 78.1% 60.9%
5041408 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.00e-01 72.6% 40.0%
3514549 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 48.0 4.30e-01 93.2% 98.1%
3286192 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 40.0 3.67e-01 74.0% 78.0%
3412732 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.57 49.0 4.01e-01 98.6% 78.6%
3585214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.55e-01 71.2% 56.0%
2516752 2.1.1.32 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.57 37.0 4.03e-01 74.0% 82.8%
4983577 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 40.0 3.59e-01 74.0% 78.1%
4961575 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 36.0 3.05e-01 74.0% 37.6%
4589285 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.57 40.0 2.38e-01 74.0% 14.3%
4956354 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 39.0 3.49e-01 72.6% 81.0%
4352702 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 39.0 3.34e-01 72.6% 70.0%
3945552 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 38.0 3.27e-01 74.0% 44.3%
4994295 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 38.0 3.17e-01 74.0% 40.6%
3799516 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.56 48.0 3.82e-01 98.6% 78.7%
3531867 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.55 42.0 3.25e-01 84.9% 61.7%
3935438 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 47.0 3.74e-01 98.6% 78.8%
3816594 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.55 48.0 3.35e-01 98.6% 75.8%
3294168 11.1.1.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.55 39.0 3.55e-01 79.5% 88.2%
3939365 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 41.0 3.55e-01 84.9% 64.8%
4291299 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.54 43.0 3.58e-01 91.8% 73.1%
3476815 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.53 37.0 3.82e-01 78.1% 77.1%
3929043 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.53 42.0 3.24e-01 95.9% 36.6%
3985617 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 38.0 3.91e-01 93.2% 81.4%
4028916 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.53 41.0 3.65e-01 87.7% 90.0%
4962106 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 40.0 3.35e-01 84.9% 48.0%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 37.0 3.13e-01 79.5% 82.2%
4239330 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.50 40.0 3.32e-01 84.9% 50.4%
4027429 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.50 42.0 3.11e-01 100.0% 34.9%
4249852 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.50 41.0 2.85e-01 94.5% 36.0%
3733718 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.50 41.0 3.92e-01 91.8% 80.0%
D2 medium residues 78-117
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 51.0 4.08e-01 100.0% 46.9%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 51.0 3.96e-01 100.0% 39.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.36e-01 95.0% 71.2%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.61 42.0 3.69e-01 75.0% 71.2%
2f4nA01 3.40.50.10790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal 0.60 46.0 3.37e-01 100.0% 27.0%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 46.0 3.94e-01 100.0% 50.0%
4gqzA00 2.60.40.3700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 3.29e-01 100.0% 28.8%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.57 44.0 3.80e-01 100.0% 64.1%
3m1cA04 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.57 44.0 3.35e-01 100.0% 40.2%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 43.0 3.66e-01 100.0% 52.9%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.14e-01 100.0% 32.3%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 44.0 3.58e-01 97.5% 72.3%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.54 40.0 3.72e-01 95.0% 65.6%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 40.0 2.79e-01 100.0% 31.2%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 41.0 3.59e-01 97.5% 68.4%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 41.0 2.96e-01 100.0% 28.7%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 3.44e-01 100.0% 41.0%
4lesA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 2.90e-01 100.0% 46.5%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 39.0 3.28e-01 100.0% 43.5%
3lupA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 2.83e-01 100.0% 25.2%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.51 38.0 3.02e-01 100.0% 71.8%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 37.0 3.13e-01 100.0% 45.4%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 38.0 2.79e-01 100.0% 54.9%
3onhA01 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.51 40.0 3.12e-01 100.0% 37.8%
4bf8A00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 39.0 2.96e-01 97.5% 65.0%
1jceA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 37.0 2.77e-01 100.0% 84.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990952 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.76 59.0 6.22e-01 87.5% 100.0%
3839138 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.64 52.0 3.27e-01 100.0% 16.2%
3609901 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.61 45.0 3.13e-01 85.0% 95.6%
3191165 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.61 48.0 3.98e-01 100.0% 45.9%
3215622 304.7.1.4 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › S8_pro-domain 0.59 44.0 3.87e-01 100.0% 95.0%
3915532 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 45.0 3.68e-01 100.0% 45.3%
4328196 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 44.0 3.82e-01 97.5% 51.2%
3388528 7056.1.1.0 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.58 44.0 4.48e-01 95.0% 100.0%
3606070 7032.1.1.0 a+b two layers › Paratox › Paratox › Paratox 0.57 45.0 4.18e-01 100.0% 68.3%
3514922 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 45.0 3.57e-01 100.0% 42.0%
3389027 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.19e-01 100.0% 75.7%
3930342 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.56 44.0 4.13e-01 97.5% 74.5%
3542605 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 3.04e-01 100.0% 29.2%
2664911 2484.1.1.53 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB_Mbl 0.54 39.0 2.99e-01 100.0% 46.8%
4108911 10.32.1.74 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cry1Ac_dom-VII 0.53 42.0 3.03e-01 97.5% 62.1%
5015298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.81e-01 100.0% 82.0%
3960809 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 41.0 2.72e-01 100.0% 20.0%
5024122 2484.1.1.53 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB_Mbl 0.51 37.0 2.70e-01 100.0% 33.5%