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MW824391.1__QZI91393.1__PODOV084v1_p0014__00014

Bact-Vir

MW824391.1__QZI91393.1__PODOV084v1_p0014__00014

Identity

Accession:
MW824391 ↗
Kingdom:
phage

Quality

62.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_340E47.2

TaxID: 2859323

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-91
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.89e-01 92.3% 86.5%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.34e-01 97.8% 95.6%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.69e-01 97.8% 95.5%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.65e-01 90.1% 96.8%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.62e-01 93.4% 99.0%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.87e-01 92.3% 98.8%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 40.0 3.28e-01 76.9% 98.9%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.26e-01 90.1% 82.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 29.0 3.52e-01 75.8% 81.5%
3gasA01 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.55 35.0 3.76e-01 71.4% 75.9%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.40e-01 97.8% 96.6%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.28e-01 95.6% 86.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 31.0 3.54e-01 79.1% 77.6%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 45.0 3.71e-01 95.6% 97.7%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 39.0 2.86e-01 83.5% 91.2%
2aj7A00 2.30.290.10 Mainly Beta › Roll › BH3618-like › BH3618-like 0.52 36.0 3.04e-01 71.4% 65.6%
1o4yA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.29e-01 100.0% 78.9%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.52 44.0 4.08e-01 95.6% 88.1%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 38.0 2.78e-01 83.5% 94.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 26.0 3.17e-01 74.7% 85.4%
6fyqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.51e-01 94.5% 75.0%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3773509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 42.0 5.03e-01 80.2% 91.7%
4517759 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.67 43.0 4.91e-01 82.4% 90.8%
4333320 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.67 44.0 5.00e-01 82.4% 92.3%
5040575 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 40.0 3.62e-01 73.6% 45.8%
3288980 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.63 45.0 3.97e-01 74.7% 71.0%
3196827 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.63 42.0 4.55e-01 87.9% 82.7%
3953524 378.1.1.23 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.63 48.0 4.01e-01 80.2% 66.5%
4977260 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 35.0 2.91e-01 85.7% 31.3%
4001872 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.60 54.0 4.23e-01 96.7% 82.2%
3493556 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 4.52e-01 90.1% 70.9%
3487901 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.60 44.0 4.76e-01 79.1% 93.3%
3253036 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.41e-01 92.3% 81.5%
3402573 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 50.0 4.58e-01 90.1% 79.1%
4528028 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.58 41.0 3.21e-01 73.6% 46.0%
3552888 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.63e-01 97.8% 88.3%
3576021 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 48.0 4.24e-01 90.1% 70.8%
3513810 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.30e-01 93.4% 88.9%
3860032 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.68e-01 91.2% 92.0%
3874175 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 4.53e-01 98.9% 86.4%
3712932 220.1.1.263 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_29 0.57 50.0 4.23e-01 98.9% 67.7%
3173654 220.1.1.191 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 0.56 46.0 3.86e-01 91.2% 76.4%
3494650 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 50.0 4.36e-01 98.9% 79.3%
3934850 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 4.24e-01 90.1% 77.5%
3414375 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.27e-01 93.4% 80.5%
3474420 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.56 48.0 4.03e-01 93.4% 70.7%
4303134 220.1.1.191 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 0.56 46.0 3.90e-01 92.3% 80.0%
3187815 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.56 41.0 2.81e-01 100.0% 20.3%
3547186 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.37e-01 96.7% 85.6%
3304191 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 49.0 3.95e-01 98.9% 78.3%
3939128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 4.23e-01 89.0% 74.5%
3921879 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 47.0 3.93e-01 94.5% 60.0%
3865191 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.55 48.0 4.53e-01 96.7% 94.5%
4180524 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 46.0 3.27e-01 98.9% 47.5%
3586554 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 4.13e-01 89.0% 95.5%
3266245 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.28e-01 95.6% 92.5%
3243105 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.54 42.0 4.15e-01 82.4% 78.9%
4202176 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.54 45.0 3.62e-01 95.6% 92.1%
3360960 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.53 29.0 3.13e-01 91.2% 60.0%
3592627 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.52 37.0 2.76e-01 75.8% 35.4%
3923391 10.12.1.44 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.51 43.0 3.27e-01 97.8% 62.5%
5001380 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 32.0 3.34e-01 97.8% 68.8%
5039156 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.50 41.0 3.04e-01 95.6% 48.8%