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MW824391.1__QZI91409.1__PODOV084v1_p0030__00030

Bact-Vir

MW824391.1__QZI91409.1__PODOV084v1_p0030__00030

Identity

Accession:
MW824391 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-61
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.81 67.0 5.17e-01 100.0% 42.1%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.80 67.0 6.26e-01 100.0% 73.6%
5yc9B01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 58.0 4.91e-01 98.3% 47.4%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 67.0 6.20e-01 100.0% 74.0%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 65.0 4.92e-01 100.0% 40.8%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 62.0 4.86e-01 100.0% 43.0%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 61.0 5.15e-01 100.0% 52.5%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 59.0 4.80e-01 100.0% 46.9%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 57.0 5.48e-01 100.0% 79.1%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.68 60.0 5.44e-01 100.0% 73.4%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 45.0 4.58e-01 70.7% 87.7%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 45.0 4.30e-01 96.6% 66.7%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 45.0 4.29e-01 91.4% 66.7%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 44.0 4.28e-01 91.4% 68.8%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.61 51.0 4.90e-01 100.0% 85.7%
1tuzA00 1.10.238.110 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Diacylglycerol kinase alpha. 0.61 52.0 4.21e-01 100.0% 51.7%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 47.0 4.51e-01 100.0% 77.9%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 41.0 4.09e-01 84.5% 69.4%
5du9B02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.58 47.0 3.19e-01 89.7% 85.7%
1vhoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 49.0 3.32e-01 100.0% 66.0%
5t3eB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.57 46.0 3.00e-01 86.2% 79.8%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.57 39.0 4.21e-01 98.3% 83.7%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 43.0 3.93e-01 89.7% 61.0%
3isxA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 48.0 3.25e-01 100.0% 67.1%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 4.04e-01 77.6% 74.1%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.57e-01 100.0% 38.4%
6n8eA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.56 47.0 3.03e-01 91.4% 75.0%
2pe3D01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 48.0 3.24e-01 100.0% 64.9%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.21e-01 100.0% 70.4%
3gb0A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 48.0 3.18e-01 100.0% 60.5%
1d4uA00 3.90.530.10 Alpha Beta › Alpha-Beta Complex › Nucleotide Excision Repair Protein XPA (XPA-MBD); B Chain A › XPA C-terminal domain 0.55 46.0 3.85e-01 100.0% 52.3%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.57e-01 89.7% 48.1%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.94e-01 84.5% 71.2%
2vsqA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.54 44.0 2.96e-01 91.4% 71.1%
5adxJ01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 37.0 3.16e-01 89.7% 46.2%
7dklA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.53e-01 86.2% 55.6%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 3.49e-01 100.0% 47.4%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.93e-01 96.6% 73.6%
6teyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.93e-01 100.0% 76.7%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.53e-01 89.7% 63.6%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.30e-01 100.0% 43.7%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 41.0 2.59e-01 100.0% 95.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.59e-01 100.0% 58.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960386 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.81 72.0 7.17e-01 96.6% 95.0%
3980161 101.1.9.45 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA 0.80 62.0 6.40e-01 94.8% 90.9%
3976864 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 66.0 6.12e-01 100.0% 77.3%
3957229 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 66.0 6.53e-01 100.0% 95.0%
3948487 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 62.0 4.68e-01 100.0% 39.3%
3164271 101.1.9.136 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF29765 0.73 63.0 6.09e-01 98.3% 89.2%
4117084 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 65.0 5.39e-01 100.0% 59.0%
5073620 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 58.0 5.69e-01 100.0% 87.7%
4056248 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 58.0 4.41e-01 98.3% 42.2%
5013111 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.66 52.0 3.35e-01 86.2% 38.5%
4547857 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 56.0 5.14e-01 100.0% 76.2%
5053793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 3.58e-01 87.9% 35.7%
3790375 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 33.0 2.56e-01 100.0% 21.6%
3270487 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 32.0 2.56e-01 100.0% 23.6%
4681355 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 31.0 2.46e-01 100.0% 21.7%
3267280 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.64 42.0 4.53e-01 98.3% 80.0%
3937187 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 32.0 2.56e-01 100.0% 24.5%
364451 101.1.9.22 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_54 0.63 54.0 4.56e-01 100.0% 57.3%
3761168 1089.1.1.1 a+b two layers › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › AsnRS_N 0.63 44.0 3.69e-01 74.1% 68.0%
5078448 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 31.0 2.48e-01 100.0% 23.6%
4666900 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 32.0 2.45e-01 100.0% 22.4%
4381440 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 31.0 2.46e-01 100.0% 23.5%
3976170 101.1.9.26 alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.61 51.0 4.91e-01 100.0% 82.9%
3948669 101.1.9.26 alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.60 51.0 4.20e-01 100.0% 50.4%
3190144 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.60 41.0 4.41e-01 98.3% 83.7%
3733217 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 46.0 3.36e-01 82.8% 76.7%
2042916 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.59 39.0 4.06e-01 98.3% 74.1%
4158216 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.59 43.0 4.36e-01 100.0% 81.7%
3190118 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.58 40.0 4.31e-01 98.3% 84.0%
4657200 7526.1.1.0 a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 0.58 46.0 2.73e-01 96.6% 10.9%
4937717 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.57 47.0 3.26e-01 100.0% 61.7%
3834987 304.9.1.46 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PHM7_cyt 0.56 29.0 2.73e-01 100.0% 36.0%
4195125 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.06e-01 84.5% 70.0%
2725 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.21e-01 100.0% 70.4%
3240617 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.55 40.0 3.97e-01 98.3% 73.3%
3491348 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.64e-01 82.8% 90.6%
3501315 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.54 40.0 3.45e-01 84.5% 48.0%
4431057 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.54 45.0 3.49e-01 98.3% 63.4%
4968989 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.68e-01 84.5% 57.6%
3185945 101.1.2.586 alpha arrays › HTH › HTH › winged helix domain › PCI, RPN7_PSMD6_C 0.54 40.0 3.49e-01 79.3% 51.7%
4945995 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.58e-01 84.5% 55.3%
4645692 101.1.2.372 alpha arrays › HTH › HTH › winged helix domain › HTH_64 0.54 40.0 3.77e-01 84.5% 65.3%
5040910 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.53 45.0 4.10e-01 96.6% 70.0%
4262041 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 45.0 2.98e-01 96.6% 61.6%
5031727 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.53 43.0 3.78e-01 100.0% 60.0%
3980036 101.1.2.372 alpha arrays › HTH › HTH › winged helix domain › HTH_64 0.52 38.0 3.57e-01 79.3% 64.0%
5012277 101.1.2.904 alpha arrays › HTH › HTH › winged helix domain › HTH_38 0.52 41.0 3.92e-01 100.0% 74.7%
2593 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.52 45.0 3.49e-01 100.0% 47.4%
5016950 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 43.0 3.80e-01 100.0% 65.6%
5029829 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.80e-01 100.0% 68.7%
4927802 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.12e-01 100.0% 35.0%
5037318 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 40.0 3.68e-01 94.8% 63.9%
4230150 7581.1.1.22 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt 0.51 42.0 2.83e-01 100.0% 95.6%
None 0.51 38.0 3.67e-01 89.7% 71.4%
3947618 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.51 42.0 2.86e-01 100.0% 93.6%
4562581 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.51 38.0 3.68e-01 89.7% 72.9%
3282985 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.50 40.0 3.70e-01 100.0% 67.1%
3865234 7581.1.1.22 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt 0.50 41.0 2.76e-01 100.0% 90.4%
5041451 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.50 43.0 3.69e-01 100.0% 66.0%