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MW824406.1__QZI92158.1__PODOV073v1_p0033__00033

Bact-Vir

MW824406.1__QZI92158.1__PODOV073v1_p0033__00033

Identity

Accession:
MW824406 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-68
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03592.22 best Terminase_2 33.9 6.20e-08 90.2% 37.1%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cmpA00 1.10.10.1400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif 0.95 76.0 7.94e-01 83.6% 100.0%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 53.0 5.54e-01 86.9% 89.3%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.62e-01 85.2% 100.0%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.71e-01 86.9% 70.7%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.27e-01 93.4% 82.9%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.15e-01 86.9% 88.1%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.23e-01 82.0% 98.2%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.07e-01 85.2% 81.0%
2ijlB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.53e-01 91.8% 69.7%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.07e-01 95.1% 78.8%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.58e-01 83.6% 76.8%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 5.15e-01 90.2% 92.5%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 5.28e-01 96.7% 93.1%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 47.0 4.52e-01 78.7% 67.1%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.16e-01 96.7% 86.7%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.31e-01 82.0% 76.1%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.56e-01 91.8% 75.3%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.80e-01 88.5% 85.7%
3s5rB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 49.0 3.48e-01 86.9% 32.7%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.30e-01 85.2% 73.9%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.56e-01 95.1% 75.9%
3vibA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 47.0 3.43e-01 90.2% 81.9%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 3.74e-01 93.4% 49.0%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 3.94e-01 91.8% 46.7%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.15e-01 86.9% 75.0%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 45.0 4.53e-01 82.0% 95.0%
5fglA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 46.0 3.34e-01 90.2% 78.5%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 45.0 4.22e-01 91.8% 66.7%
2g3bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 45.0 3.35e-01 88.5% 85.0%
3c07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 45.0 3.23e-01 90.2% 75.7%
2nx4C00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 45.0 3.33e-01 90.2% 84.5%
1z0xA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 44.0 4.33e-01 86.9% 95.5%
3csvA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 50.0 3.37e-01 100.0% 37.1%
3vthA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 50.0 3.26e-01 96.7% 36.9%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.56 46.0 3.62e-01 98.4% 50.7%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.07e-01 100.0% 87.6%
2yveB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 42.0 3.23e-01 90.2% 83.1%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 45.0 3.01e-01 93.4% 66.2%
2wuiA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 42.0 3.08e-01 90.2% 59.0%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.54 43.0 3.91e-01 88.5% 73.5%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 32.0 3.18e-01 93.4% 52.2%
1d2tA00 1.20.144.10 Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase 0.52 43.0 3.06e-01 100.0% 55.9%
1ltmA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 42.0 3.04e-01 90.2% 97.7%
3fz5B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.17e-01 100.0% 65.9%
2rp5A00 1.10.150.830 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 41.0 3.49e-01 98.4% 62.4%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4321283 101.1.1.378 alpha arrays › HTH › HTH › Three-helical HTH › Terminase_2 0.96 77.0 8.14e-01 83.6% 100.0%
3165050 101.1.1.378 alpha arrays › HTH › HTH › Three-helical HTH › Terminase_2 0.88 80.0 7.59e-01 96.7% 100.0%
5003296 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 67.0 5.50e-01 90.2% 54.5%
4973199 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.80 63.0 6.34e-01 88.5% 86.7%
4966212 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.75 57.0 5.65e-01 82.0% 83.1%
5080109 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.73 56.0 5.22e-01 82.0% 73.3%
4159688 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.73 61.0 5.86e-01 93.4% 91.4%
4984738 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 50.0 5.59e-01 85.2% 97.8%
1035813 101.1.6.2 alpha arrays › HTH › HTH › TrpR › HTH_7 0.72 53.0 5.64e-01 85.2% 94.2%
5025805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 5.40e-01 83.6% 85.5%
3500660 101.1.1.10 alpha arrays › HTH › HTH › Three-helical HTH › ARID 0.71 61.0 5.35e-01 100.0% 94.7%
3718418 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 60.0 5.44e-01 98.4% 84.7%
3946422 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.70 55.0 4.96e-01 86.9% 77.6%
3394867 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.70 48.0 4.52e-01 72.1% 58.7%
4983387 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 4.48e-01 86.9% 68.7%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 55.0 5.48e-01 90.2% 96.9%
3974013 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 56.0 5.65e-01 90.2% 100.0%
3290024 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 59.0 5.52e-01 100.0% 86.3%
3967757 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 59.0 5.61e-01 100.0% 90.7%
4955713 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 50.0 4.91e-01 77.0% 83.1%
4953897 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 4.77e-01 90.2% 85.0%
3282538 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 56.0 5.32e-01 91.8% 83.6%
2332937 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 56.0 5.31e-01 93.4% 85.1%
3978496 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 56.0 5.43e-01 95.1% 95.7%
3946019 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.68 52.0 4.69e-01 86.9% 73.3%
4492035 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 54.0 5.26e-01 90.2% 90.0%
3941460 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 53.0 5.22e-01 88.5% 93.8%
3946608 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 58.0 5.63e-01 100.0% 100.0%
4551350 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.67 56.0 4.89e-01 95.1% 68.4%
5058606 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.22e-01 91.8% 81.3%
3597464 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 5.15e-01 83.6% 86.7%
5041148 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 5.31e-01 100.0% 82.9%
3942695 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 53.0 5.28e-01 90.2% 96.9%
3946548 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.67 51.0 4.56e-01 85.2% 72.2%
3972270 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 55.0 5.31e-01 95.1% 92.9%
3589152 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 46.0 5.12e-01 80.3% 100.0%
3974583 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.66 52.0 4.58e-01 88.5% 72.6%
3280201 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.66 50.0 4.47e-01 85.2% 72.2%
3283074 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.66 57.0 5.15e-01 100.0% 82.4%
4297810 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 50.0 4.45e-01 85.2% 73.3%
4980214 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.65 52.0 4.14e-01 90.2% 83.8%
3980681 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 56.0 5.19e-01 100.0% 86.3%
3969666 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 52.0 4.68e-01 91.8% 81.1%
3286659 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 54.0 5.22e-01 95.1% 97.1%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.65 43.0 4.42e-01 73.8% 70.0%
4933929 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.92e-01 91.8% 84.0%
3975152 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 50.0 4.47e-01 86.9% 73.3%
3947768 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 49.0 4.42e-01 85.2% 72.2%
3970001 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.46e-01 86.9% 73.3%
3968396 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 50.0 4.46e-01 86.9% 72.2%
4624372 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 49.0 4.37e-01 86.9% 69.5%
3945655 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 50.0 4.47e-01 88.5% 76.7%
4664006 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 49.0 4.41e-01 86.9% 73.3%
4993585 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 47.0 4.74e-01 86.9% 83.3%
4875610 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 49.0 4.52e-01 88.5% 73.3%
3970403 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 48.0 4.37e-01 86.9% 73.3%
4267416 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 48.0 4.23e-01 86.9% 66.0%
4031535 101.1.1.275 alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.63 49.0 5.01e-01 86.9% 95.0%
4458965 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.63 48.0 4.52e-01 88.5% 83.7%
4955571 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 50.0 4.21e-01 93.4% 71.3%
3942219 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.62 49.0 4.66e-01 90.2% 88.0%
2761 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.62 50.0 4.56e-01 95.1% 75.9%
3968903 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 46.0 4.18e-01 86.9% 73.3%
5037248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.79e-01 96.7% 97.1%
4008585 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 49.0 4.38e-01 95.1% 76.7%
4950791 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.57 48.0 3.49e-01 96.7% 61.7%
3279694 5050.1.1.60 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_3 0.55 45.0 3.19e-01 90.2% 77.4%
3991300 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 41.0 3.89e-01 95.1% 68.8%
D2 medium residues 73-113
PDB