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MW824412.1__QZI92385.1__SIPHO078v2_p0026__00026

Bact-Vir

MW824412.1__QZI92385.1__SIPHO078v2_p0026__00026

Identity

Accession:
MW824412 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_14E30.1

TaxID: 2859303

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-58
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fgtA02 3.10.450.310 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 49.0 4.25e-01 88.5% 84.1%
2basB01 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.61 49.0 3.28e-01 92.3% 29.2%
3bijB00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 47.0 3.06e-01 88.5% 51.9%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 45.0 2.83e-01 86.5% 31.3%
1io1A02 2.170.280.10 Mainly Beta › Beta Complex › f41 fragment of flagellin, middle domain › f41 fragment of flagellin, middle domain 0.59 45.0 3.50e-01 92.3% 34.4%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.59 50.0 4.12e-01 100.0% 63.0%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.59 44.0 2.92e-01 86.5% 44.6%
2ox7A01 2.30.30.310 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.59 49.0 4.70e-01 96.2% 98.4%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.81e-01 100.0% 75.0%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.56 44.0 2.97e-01 92.3% 30.3%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 3.46e-01 100.0% 38.6%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.68e-01 100.0% 80.6%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.47e-01 90.4% 43.1%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.32e-01 86.5% 84.8%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 41.0 3.02e-01 92.3% 80.1%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 3.24e-01 94.2% 58.2%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.05e-01 98.1% 77.1%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.23e-01 94.2% 96.9%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 40.0 3.15e-01 90.4% 83.7%
1uhpA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 39.0 3.25e-01 88.5% 69.2%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.51 41.0 3.51e-01 92.3% 82.6%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.20e-01 86.5% 81.7%
3hutA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 38.0 2.72e-01 80.8% 49.3%
1ewiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.19e-01 92.3% 80.7%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.20e-01 82.7% 60.4%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 39.0 2.75e-01 84.6% 45.5%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.50 37.0 3.44e-01 88.5% 93.2%
1mzpA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.50 36.0 2.88e-01 82.7% 88.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3301602 5.1.2.41 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40_RFWD3 0.63 49.0 3.43e-01 88.5% 45.6%
3363154 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.63 45.0 3.93e-01 78.8% 56.0%
166460 7575.1.1.1 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 0.61 47.0 3.07e-01 88.5% 52.1%
3380327 5.1.10.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › WD40_RFWD3 0.61 45.0 3.75e-01 82.7% 74.0%
3369784 809.1.1.5 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › PHAF1 0.61 44.0 3.90e-01 80.8% 56.6%
None — 0.57 41.0 2.85e-01 78.8% 51.1%
3933335 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 47.0 2.76e-01 100.0% 12.3%
3577090 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 44.0 3.97e-01 100.0% 62.5%
3566729 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.55 44.0 3.53e-01 90.4% 92.7%
1933320 2008.1.1.76 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SwaI-like 0.54 42.0 2.78e-01 86.5% 51.8%
1878373 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.54 38.0 3.36e-01 76.9% 71.3%
4952973 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.54 44.0 3.86e-01 100.0% 70.0%
3506791 2.1.1.69 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.54 41.0 3.17e-01 90.4% 77.9%
3204891 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.05e-01 100.0% 98.7%
3370517 109.1.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.53 43.0 3.13e-01 94.2% 77.5%
3774381 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.90e-01 92.3% 97.1%
4211951 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.53 39.0 3.55e-01 86.5% 86.3%
5054541 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 43.0 2.50e-01 100.0% 10.1%
5052369 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.51 40.0 2.49e-01 98.1% 48.0%
3227081 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.58e-01 92.3% 73.8%
3467905 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 39.0 3.86e-01 88.5% 87.3%
D2 high residues 60-134
PDB
Domain cluster: rep: MK448710.1__QBX16110.1__Javan233_0030__00030__D34-99
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09643.16 best YopX 47.1 3.30e-12 100.0% 57.0%