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MW824412.1__QZI92443.1__SIPHO078v2_p0084__00084

Bact-Vir

MW824412.1__QZI92443.1__SIPHO078v2_p0084__00084

Identity

Accession:
MW824412 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_14E30.1

TaxID: 2859303

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-66
PDB
Domain cluster: rep: MF695815.1__ASX98669.1__KPP56652_55__00055__D4-60
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6jt6A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.65 44.0 3.14e-01 71.0% 57.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 46.0 5.00e-01 85.5% 90.4%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 5.13e-01 93.5% 85.7%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.63 50.0 5.14e-01 83.9% 98.3%
5bxrA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 50.0 3.82e-01 87.1% 78.0%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 43.0 4.12e-01 74.2% 75.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.71e-01 100.0% 75.3%
5uctB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.09e-01 85.5% 75.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.60 49.0 4.08e-01 90.3% 56.9%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.59 47.0 3.77e-01 87.1% 70.2%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.97e-01 100.0% 98.2%
2wyrB02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 49.0 4.55e-01 100.0% 100.0%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 4.34e-01 96.8% 76.6%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 46.0 3.67e-01 95.2% 75.2%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.95e-01 100.0% 51.2%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.50e-01 87.1% 51.1%
5trdA02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 46.0 3.79e-01 100.0% 96.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.13e-01 100.0% 66.7%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 46.0 4.69e-01 100.0% 100.0%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.82e-01 87.1% 79.1%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 44.0 4.03e-01 96.8% 72.8%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.54 45.0 4.20e-01 100.0% 98.8%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 40.0 2.53e-01 79.0% 85.5%
4jp0A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.38e-01 88.7% 83.1%
2fukA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 3.12e-01 95.2% 46.8%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.20e-01 100.0% 38.0%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.70e-01 87.1% 72.2%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.55e-01 87.1% 70.1%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.40e-01 93.5% 73.9%
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 43.0 3.64e-01 100.0% 52.9%
4pmwA02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.39e-01 71.0% 96.2%
2rhsD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.01e-01 71.0% 80.6%
8p2bA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.52 38.0 3.58e-01 82.3% 98.8%
2bhuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.13e-01 95.2% 46.9%
4l9aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.55e-01 82.3% 32.2%
2hldH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.51 34.0 3.17e-01 96.8% 52.4%
2bgoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.60e-01 100.0% 97.4%
3vgiA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.50 42.0 2.82e-01 96.8% 41.5%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3854864 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 52.0 4.41e-01 100.0% 49.0%
3584224 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 51.0 4.25e-01 100.0% 49.5%
3547084 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 51.0 4.46e-01 100.0% 58.9%
3875218 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.63 49.0 4.83e-01 90.3% 80.0%
3230083 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 50.0 4.44e-01 100.0% 60.0%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 51.0 4.53e-01 100.0% 62.2%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 43.0 4.70e-01 83.9% 90.0%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 5.16e-01 91.9% 98.2%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.61 48.0 4.97e-01 100.0% 91.4%
3815480 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.73e-01 100.0% 81.5%
5058340 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 47.0 4.51e-01 96.8% 72.9%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 49.0 3.86e-01 100.0% 42.2%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.42e-01 87.1% 70.0%
3389161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.32e-01 100.0% 60.0%
4037939 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.59 44.0 3.44e-01 83.9% 57.4%
4525683 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.59 46.0 3.74e-01 100.0% 44.9%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 50.0 4.50e-01 100.0% 68.2%
5063794 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 48.0 4.47e-01 96.8% 71.2%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.77e-01 100.0% 91.7%
3964944 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 49.0 3.80e-01 100.0% 42.1%
4047862 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 39.0 3.61e-01 71.0% 89.4%
3974846 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 49.0 4.06e-01 100.0% 53.6%
3597563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.58e-01 85.5% 61.6%
3976863 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.57 46.0 3.92e-01 100.0% 53.3%
5067286 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.57 48.0 4.29e-01 100.0% 67.4%
4189267 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.57 42.0 4.26e-01 80.6% 96.7%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.55e-01 96.8% 90.8%
3400851 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 35.0 3.75e-01 90.3% 84.4%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.56 44.0 4.23e-01 85.5% 78.6%
4985853 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.56 44.0 3.36e-01 85.5% 97.1%
2994196 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.55 43.0 4.22e-01 85.5% 89.9%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.55 47.0 4.05e-01 100.0% 60.0%
4938098 2.1.1.109 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.55 37.0 3.43e-01 72.6% 95.3%
3320922 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.54 37.0 3.33e-01 71.0% 83.5%
5032178 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 41.0 2.88e-01 87.1% 31.1%
5075340 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.54 43.0 3.41e-01 90.3% 77.1%
4998148 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.02e-01 90.3% 90.9%
4000033 220.1.1.119 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.52 40.0 3.34e-01 85.5% 67.8%
3842643 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 41.0 3.50e-01 98.4% 90.4%
4490636 1.1.2.39 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Peptidase_U4 0.51 39.0 3.11e-01 87.1% 71.7%
4530499 1.1.2.39 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Peptidase_U4 0.51 38.0 3.09e-01 85.5% 72.1%
4256788 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.51 39.0 3.45e-01 85.5% 100.0%