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MW824418.1__QZI92774.1__SIPHO010v1_p0087__00087

Bact-Vir

MW824418.1__QZI92774.1__SIPHO010v1_p0087__00087

Identity

Accession:
MW824418 ↗
Kingdom:
phage

Quality

63.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-104
PDB
D2 medium residues 1-57
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.75 54.0 4.61e-01 75.4% 52.3%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 46.0 4.99e-01 80.7% 89.1%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.66 58.0 5.04e-01 100.0% 77.8%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 45.0 3.81e-01 73.7% 49.0%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 48.0 3.59e-01 82.5% 32.2%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 46.0 3.52e-01 78.9% 33.3%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 55.0 3.54e-01 100.0% 22.5%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 54.0 5.11e-01 98.2% 97.2%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.62 49.0 3.08e-01 91.2% 15.1%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 53.0 4.80e-01 98.2% 88.5%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 3.63e-01 80.7% 51.3%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.73e-01 80.7% 45.0%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.68e-01 75.4% 90.4%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 50.0 4.83e-01 96.5% 100.0%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 42.0 3.71e-01 82.5% 48.3%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.60 42.0 3.64e-01 78.9% 59.2%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.59 47.0 4.33e-01 87.7% 77.3%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 51.0 4.34e-01 100.0% 89.7%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 44.0 2.80e-01 91.2% 14.3%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 48.0 3.09e-01 91.2% 36.6%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.58 42.0 3.18e-01 78.9% 82.8%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 47.0 3.02e-01 96.5% 17.8%
3jcmN01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 46.0 3.17e-01 93.0% 99.6%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.58 47.0 3.98e-01 93.0% 76.0%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.57 45.0 4.45e-01 91.2% 98.4%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 40.0 3.19e-01 75.4% 60.3%
1z52A02 3.30.412.10 Alpha Beta › 2-Layer Sandwich › Proaerolysin; Chain A, domain 2 › Proaerolysin, chain A, domain 2 0.57 49.0 3.54e-01 100.0% 77.5%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 4.38e-01 91.2% 95.6%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 41.0 3.07e-01 77.2% 29.7%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 39.0 2.96e-01 73.7% 79.0%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 45.0 3.91e-01 98.2% 81.4%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 43.0 3.45e-01 89.5% 56.5%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 4.08e-01 89.5% 79.3%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 45.0 2.97e-01 100.0% 62.5%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 2.87e-01 80.7% 43.2%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 43.0 3.57e-01 89.5% 66.4%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 44.0 2.83e-01 100.0% 63.5%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.37e-01 82.5% 71.6%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 40.0 3.48e-01 84.2% 100.0%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.53 43.0 3.28e-01 96.5% 79.4%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 35.0 3.56e-01 82.5% 69.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 42.0 4.06e-01 93.0% 83.3%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.72e-01 93.0% 79.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.37e-01 96.5% 61.2%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 39.0 3.23e-01 86.0% 58.4%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 38.0 3.15e-01 84.2% 85.8%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 39.0 3.91e-01 89.5% 95.1%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 43.0 3.31e-01 100.0% 77.5%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.43e-01 77.2% 57.7%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 38.0 2.55e-01 86.0% 39.9%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 39.0 3.29e-01 91.2% 88.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927544 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 46.0 5.36e-01 80.7% 100.0%
3603768 2484.1.1.24 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 45.0 3.38e-01 70.2% 35.0%
5051613 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 49.0 3.88e-01 78.9% 67.8%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 51.0 5.34e-01 91.2% 100.0%
3510695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 58.0 5.16e-01 98.2% 81.2%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 54.0 5.46e-01 96.5% 98.2%
3894031 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.63 55.0 4.89e-01 100.0% 81.2%
3946156 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.62 44.0 3.52e-01 89.5% 37.4%
3394577 7039.1.1.1 a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › PCIF1_WW 0.62 50.0 3.33e-01 89.5% 86.1%
5024203 330.10.1.0 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.62 53.0 4.61e-01 98.2% 72.2%
3475877 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 52.0 3.95e-01 100.0% 86.7%
4064214 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 47.0 4.54e-01 86.0% 90.8%
2834342 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.61 44.0 4.21e-01 77.2% 67.6%
3968678 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.61 54.0 4.08e-01 100.0% 73.6%
3215166 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.61 43.0 3.64e-01 75.4% 75.8%
4928263 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 44.0 3.63e-01 78.9% 42.7%
4945471 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 48.0 4.68e-01 91.2% 81.5%
327025 6048.1.1.1 a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.59 42.0 3.60e-01 78.9% 57.5%
4126006 325.1.7.14 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid 0.59 45.0 4.37e-01 86.0% 90.8%
4263140 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 44.0 4.19e-01 84.2% 95.7%
3785687 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.59 42.0 3.50e-01 80.7% 42.6%
3593073 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 38.0 2.61e-01 73.7% 19.5%
1509336 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 44.0 4.06e-01 89.5% 63.0%
3882464 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 3.81e-01 75.4% 64.0%
3595832 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.58 39.0 4.03e-01 80.7% 74.5%
3931799 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 39.0 4.27e-01 70.2% 88.9%
4359254 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 50.0 4.61e-01 100.0% 93.3%
4013580 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 40.0 3.41e-01 91.2% 40.0%
4926892 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.58 44.0 3.59e-01 84.2% 60.9%
4962104 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 44.0 3.36e-01 89.5% 36.2%
3611509 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.57 42.0 2.47e-01 78.9% 26.5%
3266298 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 44.0 3.35e-01 84.2% 54.5%
3898522 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 41.0 4.30e-01 80.7% 94.0%
5065211 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.56 41.0 2.73e-01 77.2% 84.0%
1075289 2.4.1.5 beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal 0.56 40.0 3.94e-01 89.5% 68.8%
4649416 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.56 44.0 4.04e-01 94.7% 77.6%
3615785 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.65e-01 100.0% 50.0%
4966044 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 39.0 2.43e-01 77.2% 40.3%
4930329 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 39.0 4.15e-01 89.5% 88.0%
4336488 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 46.0 4.36e-01 100.0% 98.6%
5037801 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.89e-01 93.0% 76.4%
3694428 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 39.0 2.39e-01 80.7% 62.4%
5052087 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.53 38.0 2.54e-01 77.2% 74.7%
2106272 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.53 44.0 3.93e-01 100.0% 94.4%
3602463 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.53 41.0 2.83e-01 87.7% 88.1%
5044541 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.53 37.0 2.48e-01 77.2% 72.3%
4986577 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.53 41.0 3.40e-01 87.7% 80.0%
3177048 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.52 36.0 3.18e-01 75.4% 96.8%
3615649 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 4.04e-01 89.5% 89.1%
4636455 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.52 36.0 3.93e-01 86.0% 93.3%
4311788 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.51 41.0 3.38e-01 94.7% 54.8%
3708068 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.79e-01 96.5% 32.5%
3598621 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 38.0 3.32e-01 84.2% 84.2%
3716575 109.4.1.747 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SGS 0.51 38.0 3.01e-01 84.2% 59.3%
3955541 2003.1.2.155 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_7 0.51 40.0 3.08e-01 87.7% 100.0%
1884919 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.51 41.0 3.65e-01 100.0% 81.1%
3717304 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.76e-01 100.0% 23.4%
5028178 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.51 36.0 2.63e-01 80.7% 85.9%
4031135 6043.1.1.3 a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.51 39.0 3.53e-01 94.7% 58.8%
4025728 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 36.0 3.01e-01 80.7% 70.4%