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MW824426.1__QZI89197.1__SIPHO038v1_p0019__00019

Bact-Vir

MW824426.1__QZI89197.1__SIPHO038v1_p0019__00019

Identity

Accession:
MW824426 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-67
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i6jB02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.59 41.0 2.65e-01 95.3% 13.9%
5hy0D03 3.30.1330.160 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbituras, RU C 0.53 46.0 3.91e-01 100.0% 88.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028710 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.57 38.0 3.67e-01 73.4% 60.0%
4087555 244.1.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.52 39.0 3.25e-01 82.8% 85.0%
4014108 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 43.0 3.13e-01 95.3% 84.9%
D2 medium residues 76-118
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gptA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 51.0 3.45e-01 76.7% 33.3%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.70e-01 90.7% 55.4%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 50.0 3.89e-01 79.1% 37.6%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.68 55.0 4.68e-01 100.0% 72.8%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.67 51.0 3.92e-01 86.0% 43.1%
4gnrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 57.0 3.72e-01 100.0% 67.7%
4q6bA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 55.0 3.62e-01 100.0% 68.2%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 50.0 3.44e-01 95.3% 26.7%
3td9A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 51.0 3.41e-01 100.0% 66.8%
1wviA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.63 52.0 3.73e-01 100.0% 66.9%
6vhyA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.62 49.0 4.39e-01 95.3% 88.2%
1ds8M02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.62 47.0 3.29e-01 88.4% 37.3%
3n0xA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 51.0 3.36e-01 100.0% 67.6%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 51.0 3.26e-01 100.0% 20.2%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.61 46.0 4.17e-01 88.4% 60.9%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 52.0 3.66e-01 100.0% 56.3%
4dbgB01 6.10.140.1100 Special › Helix non-globular › Helix Hairpins › 0.61 44.0 4.31e-01 81.4% 78.7%
1bccB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.60 46.0 3.11e-01 88.4% 68.1%
3q91B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 49.0 3.62e-01 100.0% 44.3%
1gu2A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.60 47.0 3.61e-01 100.0% 66.9%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 49.0 3.14e-01 100.0% 20.9%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.60 40.0 3.59e-01 72.1% 44.3%
1odfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 44.0 2.71e-01 81.4% 72.9%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 46.0 3.22e-01 100.0% 75.4%
1zarA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 43.0 3.54e-01 95.3% 87.6%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 43.0 3.97e-01 100.0% 67.1%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 45.0 2.96e-01 97.7% 59.8%
3unbF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 44.0 2.84e-01 97.7% 61.1%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 44.0 2.88e-01 97.7% 63.8%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 2.72e-01 100.0% 13.5%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 41.0 2.94e-01 83.7% 84.2%
1f2dA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 2.94e-01 97.7% 75.8%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 39.0 2.62e-01 88.4% 71.5%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 37.0 3.35e-01 81.4% 76.1%
3d0kB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 39.0 2.43e-01 86.0% 44.0%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031678 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.83 72.0 6.34e-01 100.0% 72.3%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 73.0 6.36e-01 100.0% 73.8%
3620979 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 71.0 6.59e-01 97.7% 90.9%
3487537 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 72.0 6.88e-01 100.0% 98.0%
3387028 101.1.2.62 alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD 0.82 71.0 6.11e-01 100.0% 71.4%
4129352 101.1.1.32 alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD 0.82 71.0 6.24e-01 100.0% 76.9%
3632862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 71.0 5.27e-01 100.0% 43.6%
3326259 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.82 66.0 6.34e-01 90.7% 84.0%
5073138 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 70.0 5.12e-01 97.7% 41.7%
3787144 101.1.1.8 alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.81 71.0 5.90e-01 100.0% 86.7%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.81 70.0 6.73e-01 100.0% 94.0%
5023957 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.81 71.0 5.77e-01 100.0% 60.0%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 71.0 6.55e-01 100.0% 81.8%
3504389 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 69.0 5.70e-01 100.0% 66.3%
4965088 101.1.2.909 alpha arrays › HTH › HTH › winged helix domain › DUF5797 0.80 71.0 5.64e-01 100.0% 56.5%
3603740 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 70.0 5.95e-01 100.0% 62.9%
3501945 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 69.0 6.07e-01 100.0% 81.5%
4014609 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.80 69.0 6.07e-01 100.0% 76.9%
3738343 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.79 69.0 6.20e-01 100.0% 85.0%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.79 67.0 6.23e-01 97.7% 83.6%
3814136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 69.0 6.37e-01 100.0% 87.3%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.79 67.0 5.95e-01 100.0% 70.8%
4889887 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.79 66.0 4.57e-01 97.7% 28.1%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 67.0 6.28e-01 100.0% 78.2%
3198979 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.78 67.0 6.08e-01 100.0% 78.3%
4014593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 67.0 6.23e-01 100.0% 85.5%
3955434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 6.36e-01 100.0% 96.0%
5017698 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.77 66.0 5.83e-01 100.0% 89.2%
3730451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 5.46e-01 100.0% 56.2%
5031849 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 53.0 4.76e-01 76.7% 51.7%
3479343 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 64.0 6.34e-01 95.3% 100.0%
3997947 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 6.29e-01 97.7% 100.0%
3226739 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.77 64.0 4.15e-01 93.0% 69.2%
5053903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 58.0 4.13e-01 81.4% 60.8%
3782428 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 4.81e-01 100.0% 45.0%
3618386 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 62.0 6.15e-01 93.0% 97.8%
3692546 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.76 64.0 6.17e-01 100.0% 96.0%
3619546 3712.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.76 55.0 4.85e-01 79.1% 52.3%
4190132 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 63.0 6.11e-01 97.7% 94.0%
3454767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 65.0 6.07e-01 100.0% 87.3%
3590733 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.76 60.0 5.76e-01 90.7% 82.0%
4486248 3586.1.1.0 alpha arrays › Protelomerase stirrup domain › Protelomerase stirrup domain › Protelomerase stirrup domain 0.76 63.0 5.40e-01 100.0% 72.0%
4961900 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.75 63.0 5.36e-01 100.0% 77.3%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 5.81e-01 97.7% 87.3%
4952808 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 5.91e-01 100.0% 90.9%
5007660 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.75 63.0 5.62e-01 100.0% 76.9%
5003693 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 63.0 5.58e-01 100.0% 76.9%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.74 63.0 5.74e-01 100.0% 78.3%
5008720 101.1.1.548 alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.74 62.0 5.55e-01 100.0% 76.9%
5021354 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.74 63.0 5.57e-01 100.0% 75.4%
5079851 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 5.64e-01 100.0% 76.7%
3243611 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 5.99e-01 100.0% 94.0%
3715143 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 5.11e-01 100.0% 62.5%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.45e-01 97.7% 76.7%
3706618 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.73 59.0 5.03e-01 95.3% 62.7%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 62.0 5.78e-01 100.0% 85.5%
5030767 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.72 50.0 4.63e-01 79.1% 55.0%
3714653 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.71 55.0 4.54e-01 86.0% 57.0%
4966213 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 58.0 5.21e-01 100.0% 76.9%
3925064 148.1.1.7 alpha arrays › Histone-like › Histone-related › Histone › TAF 0.71 48.0 4.07e-01 76.7% 41.3%
4891089 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.71 52.0 4.81e-01 81.4% 78.9%
4029825 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.69 52.0 4.31e-01 86.0% 52.4%
3405944 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.69 46.0 3.93e-01 72.1% 40.0%
3081263 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.67 45.0 4.04e-01 72.1% 46.0%
4990553 2003.1.1.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.66 48.0 3.28e-01 76.7% 33.8%
58013 5037.1.1.0 alpha bundles › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like 0.62 47.0 2.89e-01 88.4% 19.5%
2784516 5037.1.1.1 alpha bundles › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Photo_RC 0.62 47.0 2.87e-01 88.4% 19.3%
2994521 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.60 40.0 3.20e-01 72.1% 30.6%
3188307 148.1.1.10 alpha arrays › Histone-like › Histone-related › Histone › TAFII28 0.59 39.0 3.11e-01 72.1% 28.6%
3088281 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.55 45.0 2.92e-01 100.0% 62.6%
4801617 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.54 45.0 3.19e-01 100.0% 82.2%
2771090 2003.1.1.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.53 41.0 2.85e-01 93.0% 75.0%