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MW824426.1__QZI89244.1__SIPHO038v1_p0066__00066

Bact-Vir

MW824426.1__QZI89244.1__SIPHO038v1_p0066__00066

Identity

Accession:
MW824426 ↗
Kingdom:
phage

Quality

60.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-71_194-217
PDB
D2 high residues 82-189
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.70 52.0 4.60e-01 77.8% 74.8%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.69 40.0 4.36e-01 74.1% 70.1%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.68 51.0 4.57e-01 77.8% 73.5%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.68 53.0 4.52e-01 83.3% 73.6%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.67 50.0 4.52e-01 77.8% 72.4%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.66 53.0 3.85e-01 86.1% 96.9%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.65 48.0 3.46e-01 76.9% 79.6%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 48.0 3.52e-01 91.7% 28.7%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.64 47.0 3.43e-01 76.9% 75.2%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.63 41.0 3.98e-01 100.0% 57.7%
1ygaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 52.0 3.65e-01 90.7% 30.7%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 47.0 4.36e-01 81.5% 93.4%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.61 50.0 4.02e-01 88.0% 90.7%
7vu0A01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 46.0 3.12e-01 82.4% 31.9%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 49.0 3.31e-01 87.0% 55.7%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 50.0 3.98e-01 92.6% 47.2%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 47.0 4.25e-01 84.3% 76.0%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.60 46.0 2.96e-01 82.4% 32.0%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 51.0 3.54e-01 91.7% 67.6%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.59 45.0 2.87e-01 79.6% 28.8%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 39.0 3.99e-01 89.8% 74.3%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.52e-01 77.8% 81.6%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 3.42e-01 82.4% 52.6%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 45.0 3.56e-01 88.9% 41.7%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 35.0 3.35e-01 75.9% 51.1%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.56 46.0 3.44e-01 92.6% 87.5%
1t5rB00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.55 45.0 3.35e-01 87.0% 45.4%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 3.51e-01 76.9% 56.9%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 48.0 3.46e-01 95.4% 56.7%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 3.43e-01 82.4% 53.1%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.54 47.0 3.53e-01 98.1% 41.3%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.62e-01 84.3% 74.0%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.53 44.0 3.80e-01 99.1% 56.7%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 45.0 3.45e-01 89.8% 80.1%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.50e-01 84.3% 56.2%
4i0nA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 43.0 3.28e-01 88.9% 44.3%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.53 43.0 3.76e-01 96.3% 58.0%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.35e-01 76.9% 54.0%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 33.0 3.15e-01 70.4% 54.3%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 44.0 3.05e-01 91.7% 65.8%
1qunI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.45e-01 72.2% 66.1%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.28e-01 74.1% 57.1%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.50 36.0 3.37e-01 75.0% 60.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031859 11.13.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.73 50.0 3.57e-01 70.4% 79.7%
3606839 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.71 48.0 4.47e-01 82.4% 56.9%
3426868 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.70 55.0 4.63e-01 88.9% 50.0%
3644309 71.1.1.12 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.69 53.0 3.77e-01 80.6% 47.5%
4025435 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.69 55.0 4.53e-01 84.3% 67.4%
3270312 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.69 52.0 4.35e-01 77.8% 61.7%
4668983 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.69 51.0 4.46e-01 77.8% 71.2%
4403206 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.68 52.0 4.53e-01 78.7% 60.6%
3360262 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.67 51.0 4.17e-01 78.7% 60.0%
5065294 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.67 55.0 4.69e-01 87.0% 81.8%
3493155 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.67 56.0 3.96e-01 89.8% 87.7%
3534691 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.67 51.0 4.34e-01 78.7% 64.2%
4025861 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.67 53.0 4.52e-01 84.3% 68.8%
3818841 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.66 55.0 4.52e-01 92.6% 50.0%
2765234 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.66 42.0 4.46e-01 75.9% 71.1%
4466411 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.66 50.0 4.21e-01 78.7% 56.6%
4030314 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.66 55.0 4.35e-01 88.9% 66.5%
3875809 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.66 50.0 4.27e-01 78.7% 64.2%
1943 11.13.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.65 48.0 3.46e-01 76.9% 79.9%
4823574 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.65 49.0 4.30e-01 78.7% 75.0%
3782223 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.65 52.0 4.10e-01 86.1% 52.9%
3431362 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.65 54.0 4.53e-01 90.7% 54.6%
4997740 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.65 53.0 4.83e-01 87.0% 92.1%
3739953 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.64 50.0 4.38e-01 81.5% 63.2%
3734385 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.64 47.0 3.17e-01 76.9% 28.1%
3685749 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.64 50.0 4.47e-01 82.4% 70.0%
3633470 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 52.0 4.88e-01 87.0% 87.6%
3569021 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.63 56.0 4.65e-01 96.3% 65.4%
3286469 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 52.0 4.43e-01 88.9% 85.7%
3056279 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.63 51.0 4.38e-01 85.2% 63.8%
3631881 868.1.1.10 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7905 0.62 49.0 3.51e-01 84.3% 75.0%
3828738 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.62 41.0 3.63e-01 76.9% 46.5%
4999715 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.61 50.0 4.75e-01 87.0% 96.8%
4419876 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.60 43.0 3.08e-01 73.1% 61.3%
3381230 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.60 41.0 4.02e-01 80.6% 64.3%
3729448 868.1.1.10 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7905 0.60 49.0 3.43e-01 88.0% 61.4%
3735087 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.60 50.0 3.50e-01 91.7% 34.4%
2659065 265.1.1.3 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat 0.60 41.0 4.23e-01 70.4% 86.1%
4582939 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.59 53.0 3.82e-01 100.0% 97.5%
3961157 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 40.0 3.93e-01 82.4% 63.3%
3697493 5.1.5.70 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › TFIIIC_delta 0.57 41.0 2.79e-01 74.1% 20.5%
4372267 868.1.1.2 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.57 45.0 3.36e-01 86.1% 68.9%
4962576 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.57 49.0 4.45e-01 95.4% 72.4%
3506543 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.55 48.0 3.18e-01 94.4% 28.7%
4865042 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.55 46.0 3.03e-01 92.6% 84.5%
3287916 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 36.0 3.44e-01 73.1% 55.4%
3418966 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.55 38.0 2.45e-01 70.4% 16.5%
5005014 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 44.0 3.49e-01 89.8% 77.8%
4022346 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.54 47.0 3.41e-01 98.1% 56.4%
4360453 11.13.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.53 42.0 3.15e-01 88.0% 42.7%
3289451 243.1.1.63 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 0.53 38.0 3.49e-01 78.7% 57.1%
4884000 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.52 39.0 3.49e-01 91.7% 55.1%
3251828 243.1.1.40 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.52 39.0 3.22e-01 76.9% 63.8%
3284639 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 35.0 3.22e-01 75.9% 50.0%
3284315 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.51 37.0 3.54e-01 74.1% 69.6%
None 0.51 43.0 2.60e-01 92.6% 67.2%
3385898 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.51 38.0 3.42e-01 80.6% 100.0%
1146698 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.51 36.0 3.36e-01 74.1% 61.4%