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MW824429.1__QZI93064.1__SIPHO013v1_p0003__00003

Bact-Vir

MW824429.1__QZI93064.1__SIPHO013v1_p0003__00003

Identity

Accession:
MW824429 ↗
Kingdom:
phage

Quality

69.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_82E33.2

TaxID: 2859349

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-79
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.79 65.0 5.73e-01 93.0% 68.2%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.68 48.0 4.47e-01 77.2% 57.9%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 44.0 4.42e-01 80.7% 66.1%
1a5tA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 27.0 3.20e-01 78.9% 65.0%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 38.0 3.76e-01 82.5% 70.0%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 38.0 3.28e-01 77.2% 44.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3224580 3538.1.1.0 ↗ extended segments › MerF › MerF › MerF 0.89 57.0 5.65e-01 100.0% 63.3%
3563871 603.1.1.121 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821 0.74 65.0 5.19e-01 100.0% 49.6%
4953182 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.69 58.0 4.14e-01 98.2% 31.7%