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MW824430.1__QZI89440.1__SIPHO063v1_p0082__00082
Bact-VirMW824430.1__QZI89440.1__SIPHO063v1_p0082__00082
Identity
- Accession:
- MW824430 ↗
- Kingdom:
- phage
Quality
74.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-35
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e12A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.75 | 53.0 | 3.22e-01 | 75.8% | 22.8% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.69 | 56.0 | 4.57e-01 | 90.9% | 48.4% |
| 2vxdA00 | 1.10.10.2100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain | 0.66 | 50.0 | 4.28e-01 | 84.8% | 66.7% |
| 3hh0A02 | 6.10.250.360 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 47.0 | 4.02e-01 | 100.0% | 41.9% |
| 1khvA04 | 6.10.140.320 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 50.0 | 4.49e-01 | 93.9% | 87.0% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.65 | 49.0 | 3.64e-01 | 81.8% | 36.0% |
| 2e19A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 49.0 | 4.65e-01 | 97.0% | 68.1% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.65 | 54.0 | 3.46e-01 | 100.0% | 18.2% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.64 | 52.0 | 4.25e-01 | 93.9% | 56.9% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 46.0 | 3.68e-01 | 81.8% | 42.5% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.63 | 53.0 | 4.26e-01 | 100.0% | 48.5% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 51.0 | 3.78e-01 | 100.0% | 36.0% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.62 | 50.0 | 4.02e-01 | 100.0% | 44.6% |
| 3j27B00 | 1.10.8.970 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Flavivirus envelope glycoprotein M-like | 0.62 | 49.0 | 4.04e-01 | 100.0% | 52.8% |
| 2yg5A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 53.0 | 3.31e-01 | 100.0% | 43.0% |
| 1chuA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.62 | 45.0 | 3.36e-01 | 81.8% | 31.8% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.62 | 50.0 | 4.18e-01 | 93.9% | 77.0% |
| 5hayA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.61 | 50.0 | 3.76e-01 | 90.9% | 40.5% |
| 3w3sA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 50.0 | 2.88e-01 | 97.0% | 45.0% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.61 | 47.0 | 2.65e-01 | 84.8% | 30.0% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.61 | 49.0 | 3.82e-01 | 100.0% | 40.2% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 49.0 | 3.80e-01 | 93.9% | 83.5% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.60 | 47.0 | 3.68e-01 | 100.0% | 37.8% |
| 2qtqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 43.0 | 2.74e-01 | 81.8% | 17.3% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 51.0 | 3.15e-01 | 100.0% | 34.0% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.59 | 46.0 | 4.16e-01 | 100.0% | 61.4% |
| 3ns4A00 | 1.10.357.110 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus | 0.59 | 45.0 | 2.89e-01 | 97.0% | 53.2% |
| 4fcgA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.57 | 47.0 | 2.78e-01 | 100.0% | 17.2% |
| 2pusA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.54 | 42.0 | 3.65e-01 | 93.9% | 54.7% |
| 1eo0A00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.53 | 37.0 | 3.24e-01 | 100.0% | 58.4% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.52 | 39.0 | 3.05e-01 | 100.0% | 31.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051613 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.74 | 59.0 | 4.18e-01 | 100.0% | 28.8% |
| 4937828 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.70 | 48.0 | 3.70e-01 | 100.0% | 32.0% |
| 3330107 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.70 | 55.0 | 4.87e-01 | 90.9% | 66.0% |
| 5027312 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.69 | 51.0 | 3.61e-01 | 81.8% | 28.2% |
| 3570117 | 375.6.1.2 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 | 0.68 | 54.0 | 4.57e-01 | 93.9% | 85.0% |
| 3361840 | 3796.1.1.0 ↗ | alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain | 0.67 | 52.0 | 4.95e-01 | 90.9% | 72.5% |
| 3545962 | 192.8.1.247 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Erf4 | 0.66 | 52.0 | 3.68e-01 | 100.0% | 33.8% |
| 4027561 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.66 | 53.0 | 4.82e-01 | 100.0% | 70.0% |
| 3386554 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.65 | 49.0 | 3.81e-01 | 81.8% | 42.7% |
| 3926907 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.65 | 53.0 | 3.15e-01 | 100.0% | 15.4% |
| 4024467 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.65 | 48.0 | 3.38e-01 | 100.0% | 27.6% |
| 3189848 | 3361.1.1.0 ↗ | alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 | 0.64 | 51.0 | 4.03e-01 | 100.0% | 45.9% |
| 3181756 | 7579.1.1.13 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH | 0.64 | 46.0 | 2.80e-01 | 100.0% | 10.3% |
| 3807618 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 52.0 | 4.44e-01 | 93.9% | 58.2% |
| 3250262 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.63 | 48.0 | 3.13e-01 | 100.0% | 17.1% |
| 3917194 | 2004.1.1.185 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11,AAA_12 | 0.62 | 53.0 | 2.89e-01 | 100.0% | 15.5% |
| 2674763 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.62 | 48.0 | 3.95e-01 | 100.0% | 44.0% |
| 3999314 | 5058.1.1.35 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › EMC6 | 0.61 | 46.0 | 3.83e-01 | 100.0% | 42.7% |
| 4942992 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.61 | 48.0 | 4.38e-01 | 100.0% | 70.0% |
| 1877692 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.60 | 47.0 | 4.36e-01 | 100.0% | 68.8% |
| 3929263 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.59 | 46.0 | 3.67e-01 | 97.0% | 48.8% |
| 4319295 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.58 | 50.0 | 3.55e-01 | 100.0% | 81.0% |
| 4872460 | 1140.1.1.1 ↗ | alpha duplicates or obligate multimers › Traversal protein CelTOS › Traversal protein CelTOS › Traversal protein CelTOS › CelTOS | 0.56 | 44.0 | 3.90e-01 | 100.0% | 57.9% |
| 5021551 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.56 | 44.0 | 2.98e-01 | 100.0% | 27.5% |
| 4946320 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 37.0 | 2.77e-01 | 100.0% | 26.7% |
| 4248629 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.53 | 44.0 | 3.95e-01 | 90.9% | 100.0% |
| 3366426 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.50 | 39.0 | 3.55e-01 | 100.0% | 61.8% |