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MW824431.1__QZI93177.1__SIPHO049v1_p0052__00052
Bact-VirMW824431.1__QZI93177.1__SIPHO049v1_p0052__00052
Identity
- Accession:
- MW824431 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 409-487
Domain cluster:
rep: KF623293.1__AHI61222.1__SHOU24_25__00025__D663-719
D2
high
residues 491-648
Domain cluster:
rep: MW824417.1__QZI92638.1__SIPHO059v1_p0043__00043__D1057-1205
D3
medium
residues 35-97
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wxjA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.66 | 45.0 | 3.72e-01 | 71.4% | 95.4% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.64 | 43.0 | 4.70e-01 | 74.6% | 89.8% |
| 1pb7A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.64 | 44.0 | 3.61e-01 | 71.4% | 91.7% |
| 5wjpA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.61 | 43.0 | 3.68e-01 | 73.0% | 95.8% |
| 2pbzA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.61 | 29.0 | 3.52e-01 | 71.4% | 71.1% |
| 1wgrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 39.0 | 3.62e-01 | 77.8% | 51.2% |
| 3c8zA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 40.0 | 2.62e-01 | 71.4% | 31.0% |
| 4cckA03 | 3.90.930.40 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.59 | 42.0 | 3.26e-01 | 74.6% | 65.8% |
| 5z8nA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 34.0 | 3.76e-01 | 71.4% | 77.1% |
| 2fj0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 44.0 | 2.63e-01 | 84.1% | 52.5% |
| 1q5qA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 44.0 | 3.08e-01 | 85.7% | 79.0% |
| 3u31A02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.56 | 41.0 | 3.61e-01 | 79.4% | 52.5% |
| 3py8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 39.0 | 3.01e-01 | 74.6% | 51.4% |
| 4nwyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 38.0 | 3.12e-01 | 74.6% | 46.9% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 45.0 | 3.13e-01 | 100.0% | 60.3% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.40e-01 | 73.0% | 60.5% |
| 2d44A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 40.0 | 2.71e-01 | 88.9% | 36.9% |
| 3al9A02 | 3.30.1680.10 | Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 | 0.52 | 31.0 | 3.31e-01 | 77.8% | 66.7% |
| 5ujeA01 | 3.30.1760.10 | Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 | 0.52 | 37.0 | 3.18e-01 | 79.4% | 58.6% |
| 3dddA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 34.0 | 2.85e-01 | 71.4% | 50.0% |
| 3l2pA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.51 | 39.0 | 3.21e-01 | 85.7% | 70.8% |
| 2ln7A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.50 | 36.0 | 2.84e-01 | 77.8% | 90.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3480521 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 46.0 | 4.12e-01 | 81.0% | 86.7% |
| 3616486 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.59 | 37.0 | 3.53e-01 | 71.4% | 52.0% |
| 4964926 | 375.1.1.335 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7117 | 0.58 | 34.0 | 4.04e-01 | 71.4% | 92.5% |
| 3431728 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 32.0 | 3.46e-01 | 74.6% | 63.6% |
| 4163860 | 375.1.1.199 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 | 0.56 | 37.0 | 4.31e-01 | 71.4% | 95.6% |
| 3387817 | 4244.1.1.1 ↗ | a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › Cofac_haem_bdg | 0.55 | 42.0 | 2.82e-01 | 84.1% | 76.4% |
| 3998356 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 36.0 | 4.05e-01 | 85.7% | 100.0% |
| 3607533 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.53 | 44.0 | 2.94e-01 | 100.0% | 71.8% |
| 3311191 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.52 | 33.0 | 3.53e-01 | 73.0% | 74.5% |
| 3217894 | 11.1.1.889 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26428 | 0.52 | 36.0 | 3.12e-01 | 73.0% | 54.0% |
| 3392402 | 355.1.1.9 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI_PlexinA-B | 0.52 | 31.0 | 3.54e-01 | 79.4% | 80.0% |
| 4143691 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.52 | 41.0 | 2.72e-01 | 90.5% | 59.7% |
| 3509991 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.52 | 38.0 | 3.57e-01 | 81.0% | 97.5% |
| 394809 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.51 | 35.0 | 3.42e-01 | 73.0% | 62.5% |
| 4018352 | 12.1.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C | 0.51 | 34.0 | 3.36e-01 | 76.2% | 62.9% |
| 4508989 | 2007.1.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase | 0.50 | 38.0 | 2.65e-01 | 84.1% | 91.1% |
D4
medium
residues 98-198
Domain cluster:
rep: KF623293.1__AHI61222.1__SHOU24_25__00025__D383-477
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qawH03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 33.0 | 3.07e-01 | 98.0% | 38.8% |
| 3iayA06 | 6.10.140.1540 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 22.0 | 2.97e-01 | 84.2% | 94.7% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 29.0 | 3.14e-01 | 87.1% | 65.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3486447 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.64 | 33.0 | 3.35e-01 | 100.0% | 46.7% |
| 3519123 | 304.169.1.3 ↗ | a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX | 0.61 | 27.0 | 2.92e-01 | 94.1% | 45.6% |
| 3884573 | 11.1.1.318 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N | 0.60 | 35.0 | 3.73e-01 | 98.0% | 64.4% |
D5
medium
residues 199-294
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 32.0 | 3.56e-01 | 82.3% | 75.3% |
D6
medium
residues 295-374
Domain cluster:
representative