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MW824431.1__QZI93215.1__SIPHO049v1_p0090__00090
Bact-VirMW824431.1__QZI93215.1__SIPHO049v1_p0090__00090
Identity
- Accession:
- MW824431 ↗
- Kingdom:
- phage
Quality
69.8
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-77
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.72 | 52.0 | 4.85e-01 | 100.0% | 62.0% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.68 | 48.0 | 4.00e-01 | 100.0% | 41.7% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.68 | 62.0 | 4.94e-01 | 100.0% | 56.1% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.67 | 48.0 | 4.55e-01 | 100.0% | 62.8% |
| 2qf4A02 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.65 | 52.0 | 4.70e-01 | 100.0% | 62.6% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 50.0 | 4.55e-01 | 98.4% | 63.5% |
| 6zlvA01 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.64 | 51.0 | 4.84e-01 | 98.4% | 72.7% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.61 | 54.0 | 5.12e-01 | 100.0% | 92.2% |
| 3s9cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 46.0 | 3.84e-01 | 100.0% | 45.0% |
| 1agjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 43.0 | 3.42e-01 | 95.3% | 35.8% |
| 5fahA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 47.0 | 3.94e-01 | 100.0% | 47.9% |
| 1azzA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 45.0 | 3.77e-01 | 100.0% | 44.5% |
| 3iuwA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.59 | 49.0 | 4.60e-01 | 100.0% | 74.7% |
| 2gqqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.57 | 41.0 | 3.76e-01 | 100.0% | 57.6% |
| 5jpmH01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 46.0 | 3.73e-01 | 100.0% | 44.4% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.57 | 50.0 | 3.08e-01 | 100.0% | 22.5% |
| 2d37A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 47.0 | 3.72e-01 | 100.0% | 60.6% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 47.0 | 3.74e-01 | 100.0% | 61.2% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 47.0 | 3.71e-01 | 100.0% | 61.5% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 48.0 | 3.72e-01 | 100.0% | 61.5% |
| 3bnkA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 47.0 | 3.50e-01 | 100.0% | 52.7% |
| 3fn2A00 | 3.30.2200.10 | Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 | 0.56 | 38.0 | 3.41e-01 | 100.0% | 48.5% |
| 2r6vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 46.0 | 3.57e-01 | 100.0% | 59.8% |
| 1r3eA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.55 | 47.0 | 3.34e-01 | 100.0% | 48.0% |
| 1i0rA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 45.0 | 3.56e-01 | 100.0% | 62.1% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 45.0 | 4.04e-01 | 100.0% | 65.0% |
| 4b6eB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 48.0 | 3.41e-01 | 100.0% | 47.0% |
| 2cfxA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.54 | 37.0 | 3.37e-01 | 100.0% | 51.1% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 45.0 | 3.91e-01 | 98.4% | 60.8% |
| 1rwuA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 39.0 | 3.61e-01 | 100.0% | 60.9% |
| 2nwuB01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.52 | 40.0 | 3.33e-01 | 87.5% | 73.0% |
| 4eckA01 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.52 | 39.0 | 2.88e-01 | 100.0% | 29.1% |
| 3k2hA01 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.52 | 38.0 | 2.78e-01 | 100.0% | 27.3% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.67e-01 | 96.9% | 66.1% |
| 1yw6B00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 42.0 | 2.82e-01 | 100.0% | 22.8% |
| 5af7B02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.51 | 44.0 | 3.69e-01 | 100.0% | 58.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.76 | 59.0 | 6.14e-01 | 100.0% | 89.8% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 65.0 | 6.14e-01 | 98.4% | 96.0% |
| 4266110 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.69 | 42.0 | 4.13e-01 | 89.1% | 57.1% |
| 364260 | 70.4.1.3 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 | 0.68 | 62.0 | 4.53e-01 | 100.0% | 66.9% |
| 5005052 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.65 | 49.0 | 5.17e-01 | 96.9% | 100.0% |
| 3492991 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.63 | 52.0 | 4.14e-01 | 100.0% | 44.0% |
| 5022501 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.62 | 55.0 | 5.42e-01 | 100.0% | 97.1% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 55.0 | 5.28e-01 | 100.0% | 97.3% |
| 3490463 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.61 | 54.0 | 3.65e-01 | 100.0% | 55.1% |
| 4387060 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.61 | 49.0 | 3.41e-01 | 96.9% | 26.0% |
| None | — | 0.61 | 49.0 | 3.42e-01 | 96.9% | 26.7% | |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.60 | 52.0 | 5.12e-01 | 96.9% | 97.1% |
| 3485102 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.59 | 51.0 | 3.99e-01 | 100.0% | 92.4% |
| 3964748 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 52.0 | 4.42e-01 | 100.0% | 62.9% |
| 3500523 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.58 | 48.0 | 3.23e-01 | 100.0% | 21.9% |
| 3965235 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.57 | 42.0 | 3.58e-01 | 100.0% | 45.2% |
| 3482891 | 1.1.16.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Trypsin | 0.56 | 45.0 | 4.37e-01 | 100.0% | 80.0% |
| 1141903 | 3488.1.1.0 ↗ | a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain | 0.56 | 38.0 | 3.41e-01 | 100.0% | 48.5% |
| 5029540 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.52 | 43.0 | 3.27e-01 | 93.8% | 91.9% |
| 5078833 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.51 | 44.0 | 3.01e-01 | 100.0% | 28.4% |
| 5031634 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.51 | 42.0 | 3.25e-01 | 95.3% | 88.1% |
D2
medium
residues 78-153
Domain cluster:
rep: MZ605292.1__QYW06465.1__uan_053__00053__D84-149
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 41.0 | 2.96e-01 | 100.0% | 25.1% |
| 3ir1B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 34.0 | 2.87e-01 | 100.0% | 31.1% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 40.0 | 3.86e-01 | 98.7% | 61.2% |
| 5fahA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 38.0 | 3.36e-01 | 100.0% | 45.3% |
| 3h2bB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 2.83e-01 | 100.0% | 31.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3968188 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.66 | 41.0 | 3.40e-01 | 100.0% | 35.6% |
| 4011585 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.63 | 43.0 | 3.39e-01 | 100.0% | 34.8% |
| 3368700 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 38.0 | 3.33e-01 | 85.5% | 43.6% |
| 4006501 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.57 | 36.0 | 2.97e-01 | 98.7% | 33.6% |
| 4588531 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.56 | 49.0 | 4.17e-01 | 100.0% | 75.4% |
| 3937776 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.54 | 35.0 | 3.61e-01 | 88.2% | 68.5% |
| 3407091 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 41.0 | 2.84e-01 | 100.0% | 23.7% |