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MW824431.1__QZI93223.1__SIPHO049v1_p0098__00098

Bact-Vir

MW824431.1__QZI93223.1__SIPHO049v1_p0098__00098

Identity

Accession:
MW824431 ↗
Kingdom:
phage

Quality

60.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_PS14A.1

TaxID: 2859353

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-62
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 5.88e-01 93.2% 83.1%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 6.29e-01 84.7% 100.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 62.0 6.20e-01 93.2% 91.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.73e-01 91.5% 90.9%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 59.0 4.77e-01 100.0% 51.2%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 52.0 4.20e-01 84.7% 78.0%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 58.0 4.44e-01 100.0% 81.8%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 58.0 4.48e-01 100.0% 65.6%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.62 47.0 4.12e-01 96.6% 54.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.83e-01 89.8% 94.9%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.61 49.0 3.71e-01 94.9% 57.6%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.59 43.0 3.82e-01 79.7% 97.8%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 48.0 4.25e-01 100.0% 98.9%
2j9uB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.57 41.0 4.37e-01 78.0% 100.0%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.56 41.0 3.39e-01 81.4% 62.5%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 4.04e-01 100.0% 97.9%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 49.0 4.16e-01 98.3% 94.8%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.56 39.0 3.64e-01 94.9% 58.7%
2b0aA00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.55 37.0 2.71e-01 71.2% 76.3%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.55 40.0 3.73e-01 78.0% 60.5%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 46.0 4.31e-01 100.0% 93.7%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.11e-01 100.0% 28.3%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 2.79e-01 100.0% 17.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 47.0 3.46e-01 100.0% 62.9%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.42e-01 89.8% 47.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 45.0 3.86e-01 100.0% 89.6%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.03e-01 89.8% 35.5%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 43.0 3.78e-01 100.0% 99.0%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.80e-01 98.3% 75.7%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 46.0 3.72e-01 98.3% 80.3%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 43.0 3.70e-01 94.9% 85.9%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 41.0 4.10e-01 96.6% 100.0%
1q90C00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 43.0 3.40e-01 94.9% 76.2%
2atpD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.61e-01 100.0% 81.2%
3wleA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 39.0 2.72e-01 84.7% 100.0%
3zjaA01 2.60.40.1890 Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone 0.51 43.0 3.64e-01 100.0% 74.5%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 44.0 2.80e-01 100.0% 78.5%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 43.0 3.45e-01 98.3% 78.2%
1y8xB00 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.50 42.0 3.73e-01 98.3% 85.9%
1i5pA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 43.0 3.27e-01 100.0% 68.4%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 66.0 6.66e-01 96.6% 98.3%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 62.0 6.37e-01 88.1% 94.5%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.75 64.0 5.92e-01 94.9% 86.7%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 64.0 6.29e-01 96.6% 95.3%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.73e-01 81.4% 92.0%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.70 61.0 5.17e-01 98.3% 65.0%
3225056 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 54.0 4.42e-01 84.7% 70.0%
3690350 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 53.0 4.27e-01 84.7% 85.0%
5043002 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.69 41.0 4.65e-01 89.8% 80.0%
4030120 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 52.0 3.08e-01 84.7% 17.4%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.68 58.0 4.91e-01 100.0% 61.0%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 54.0 5.59e-01 89.8% 96.4%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.67 55.0 5.65e-01 91.5% 98.2%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.67 53.0 4.78e-01 89.8% 64.7%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 54.0 4.78e-01 100.0% 61.1%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.65 54.0 4.76e-01 98.3% 62.2%
5077562 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.65 53.0 5.01e-01 94.9% 84.0%
3760738 4357.1.1.9 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE, WWE_3 0.63 44.0 3.34e-01 74.6% 49.0%
3390562 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 45.0 4.27e-01 79.7% 64.3%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.62 50.0 4.78e-01 96.6% 77.1%
4136160 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 47.0 4.10e-01 88.1% 91.0%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.92e-01 96.6% 90.8%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.96e-01 93.2% 100.0%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.95e-01 100.0% 86.2%
4159881 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.61 45.0 3.99e-01 84.7% 84.2%
4144048 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 42.0 3.85e-01 83.1% 58.7%
4033197 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 3.76e-01 83.1% 55.0%
4117582 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.59 51.0 4.03e-01 100.0% 73.6%
3612075 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 51.0 3.50e-01 100.0% 34.3%
4958674 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 48.0 4.16e-01 100.0% 91.0%
4979014 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 46.0 3.58e-01 89.8% 43.7%
4881914 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 49.0 3.45e-01 100.0% 72.1%
3972645 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 45.0 3.70e-01 100.0% 69.6%
3254683 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.56 40.0 3.00e-01 78.0% 92.9%
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 47.0 3.95e-01 100.0% 62.7%
3521189 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.59e-01 86.4% 81.9%
3234951 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.55 46.0 3.13e-01 100.0% 78.4%
3517637 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 43.0 2.91e-01 93.2% 39.6%
5003403 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.54 41.0 4.01e-01 84.7% 96.9%
3405984 11.2.1.24 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › SPATA6 0.53 39.0 3.02e-01 79.7% 100.0%
3597473 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 43.0 3.47e-01 96.6% 67.7%
3232211 11.2.1.58 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF26186 0.53 44.0 3.09e-01 98.3% 94.3%
3503759 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.52 45.0 2.98e-01 100.0% 56.2%
3788725 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 43.0 3.66e-01 100.0% 90.0%
5058825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.57e-01 86.4% 62.7%
5058699 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.52 41.0 3.62e-01 86.4% 76.5%
3935286 11.2.1.58 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF26186 0.52 41.0 3.02e-01 94.9% 53.2%
3611121 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 2.55e-01 79.7% 21.7%
5030111 375.1.1.12 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.51 37.0 3.71e-01 83.1% 85.9%
D2 high residues 68-131
PDB