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MW824433.1__QZI89622.1__SIPHO076v1_p0089__00089

Bact-Vir

MW824433.1__QZI89622.1__SIPHO076v1_p0089__00089

Identity

Accession:
MW824433 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_PS34B.1

TaxID: 2859362

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-96
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 6.57e-01 97.0% 97.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 6.52e-01 95.5% 100.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 6.21e-01 93.9% 100.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.67e-01 98.5% 95.4%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.66 52.0 4.32e-01 100.0% 47.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.69e-01 98.5% 95.7%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 43.0 3.11e-01 72.7% 73.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 52.0 5.24e-01 89.4% 100.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 4.91e-01 86.4% 100.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.77e-01 97.0% 92.0%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 3.98e-01 83.3% 65.6%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.59e-01 100.0% 74.4%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 41.0 2.72e-01 75.8% 45.7%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.17e-01 100.0% 71.9%
5cfvA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.56 42.0 3.67e-01 83.3% 66.4%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 46.0 3.29e-01 100.0% 42.4%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.54 42.0 4.11e-01 86.4% 90.5%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 43.0 3.67e-01 90.9% 97.5%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 45.0 3.82e-01 97.0% 99.2%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 43.0 3.25e-01 92.4% 65.0%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.93e-01 93.9% 94.4%
5fubA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 39.0 2.93e-01 80.3% 98.4%
2jvnA00 3.90.640.80 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.52 37.0 3.07e-01 95.5% 38.9%
5yhhA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 46.0 3.26e-01 98.5% 75.9%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 46.0 3.23e-01 100.0% 70.5%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 41.0 3.38e-01 93.9% 91.4%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.60e-01 100.0% 99.2%
3azwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.10e-01 100.0% 61.7%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 38.0 3.22e-01 81.8% 56.7%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 39.0 3.46e-01 87.9% 85.2%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.33e-01 90.9% 59.6%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.50 40.0 3.05e-01 92.4% 89.9%
1qu0C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.18e-01 100.0% 69.4%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 42.0 3.57e-01 100.0% 58.1%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.35e-01 89.4% 93.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 60.0 6.85e-01 90.9% 100.0%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 60.0 6.50e-01 92.4% 92.7%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 6.62e-01 95.5% 94.5%
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 58.0 6.26e-01 92.4% 89.1%
4935681 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 61.0 6.63e-01 93.9% 98.2%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 59.0 6.40e-01 92.4% 94.5%
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 57.0 6.41e-01 90.9% 100.0%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 68.0 6.85e-01 98.5% 100.0%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 65.0 6.64e-01 97.0% 98.5%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 65.0 6.63e-01 97.0% 98.5%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 65.0 6.57e-01 97.0% 97.0%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 65.0 6.59e-01 97.0% 98.5%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 65.0 6.55e-01 97.0% 98.5%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 64.0 6.50e-01 97.0% 100.0%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 63.0 6.40e-01 95.5% 96.9%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 65.0 6.60e-01 98.5% 100.0%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 62.0 6.33e-01 97.0% 96.9%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 62.0 6.34e-01 95.5% 100.0%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 62.0 6.32e-01 95.5% 100.0%
3706087 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.73e-01 97.0% 96.7%
4331428 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.68 55.0 4.34e-01 100.0% 42.9%
4034335 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.68 53.0 4.50e-01 98.5% 51.8%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.66 59.0 5.83e-01 100.0% 95.7%
3164898 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.66 54.0 4.81e-01 100.0% 62.1%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.66 59.0 5.79e-01 100.0% 95.7%
2106277 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.66 53.0 4.27e-01 97.0% 46.0%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 55.0 5.24e-01 97.0% 81.2%
4926953 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.14e-01 87.9% 69.3%
1685099 1.1.7.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N 0.62 43.0 4.50e-01 95.5% 81.4%
3927945 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.90e-01 86.4% 61.7%
4113246 220.1.1.153 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.57 45.0 3.64e-01 87.9% 82.2%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.57 45.0 4.26e-01 87.9% 83.7%
2887272 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.56 46.0 4.06e-01 93.9% 91.3%
3919968 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 42.0 3.57e-01 86.4% 89.6%
5058743 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.56 47.0 3.49e-01 100.0% 64.1%
3241305 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.56 46.0 3.67e-01 93.9% 61.4%
3925491 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 43.0 3.11e-01 89.4% 65.0%
4958733 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.29e-01 93.9% 90.0%
4312097 295.1.1.15 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.55 42.0 3.17e-01 84.8% 87.4%
4950402 881.4.1.0 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.55 37.0 3.05e-01 81.8% 36.2%
3170306 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.55 43.0 3.53e-01 90.9% 80.0%
3788021 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.04e-01 87.9% 85.3%
3785687 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.53 41.0 3.60e-01 90.9% 71.3%
134104 9.1.1.22 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3642 0.53 42.0 3.93e-01 93.9% 94.4%
3315072 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.53 39.0 3.99e-01 81.8% 83.1%
3900157 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 44.0 3.21e-01 100.0% 68.4%
5002093 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 42.0 3.39e-01 100.0% 80.7%
3223862 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.50 42.0 3.09e-01 100.0% 54.6%