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MW824434.1__QZI93307.1__SIPHO075v1_p0084__00084

Bact-Vir

MW824434.1__QZI93307.1__SIPHO075v1_p0084__00084

Identity

Accession:
MW824434 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_PS65A.1

TaxID: 2859364

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-61
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qmqA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.71 36.0 2.25e-01 78.2% 9.0%
2oryA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 46.0 2.85e-01 70.9% 33.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.04e-01 100.0% 56.2%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.62 45.0 3.79e-01 100.0% 43.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.58 40.0 3.55e-01 100.0% 45.7%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.55 33.0 2.43e-01 80.0% 21.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 4.07e-01 100.0% 89.4%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.15e-01 100.0% 76.2%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 43.0 2.82e-01 96.4% 58.6%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.34e-01 100.0% 53.4%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.40e-01 100.0% 46.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 3.41e-01 100.0% 87.8%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.76e-01 87.3% 87.5%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 44.0 3.39e-01 100.0% 73.7%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 39.0 2.91e-01 90.9% 80.9%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621272 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.67 56.0 4.21e-01 100.0% 37.8%
4963695 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 39.0 3.07e-01 85.5% 29.1%
3800384 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.65 54.0 4.30e-01 100.0% 45.2%
3784412 5.1.4.44 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1_2 0.65 51.0 3.00e-01 89.1% 36.2%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.63 49.0 3.20e-01 89.1% 81.2%
3995638 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 43.0 3.39e-01 94.5% 31.5%
3228778 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.62 54.0 4.60e-01 100.0% 64.4%
3693076 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 51.0 3.86e-01 100.0% 70.7%
5005640 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.61 34.0 3.30e-01 70.9% 43.1%
3991018 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.61 53.0 4.71e-01 100.0% 71.2%
3213725 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.60 49.0 3.18e-01 92.7% 85.0%
3759486 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.60 47.0 4.22e-01 89.1% 71.2%
4977713 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.59 49.0 3.24e-01 100.0% 30.2%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.83e-01 100.0% 61.5%
3509371 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 42.0 3.40e-01 94.5% 37.4%
3275483 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.40e-01 90.9% 91.4%
4943257 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 49.0 3.16e-01 100.0% 29.1%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 3.63e-01 100.0% 41.9%
4025547 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.57 44.0 4.02e-01 87.3% 74.7%
4581369 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.56 44.0 3.70e-01 100.0% 48.6%
5030556 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.56 43.0 3.81e-01 87.3% 65.9%
3830478 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.56 43.0 3.57e-01 87.3% 54.4%
4785124 3274.1.1.1 ↗ extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.55 42.0 4.02e-01 87.3% 86.8%
3798455 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 42.0 3.46e-01 87.3% 50.9%
4622062 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 2.93e-01 100.0% 21.7%
4171258 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.55 42.0 3.86e-01 87.3% 74.7%
3636066 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.54 44.0 3.35e-01 100.0% 68.1%
3618061 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 40.0 3.40e-01 81.8% 78.9%
4196939 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.54 41.0 3.74e-01 87.3% 70.0%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.85e-01 100.0% 62.7%
4943159 330.1.1.21 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5_C 0.53 41.0 3.41e-01 87.3% 53.3%
3719807 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 43.0 3.38e-01 96.4% 91.4%
3336892 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.53 41.0 3.27e-01 89.1% 44.8%
3298321 3274.1.1.1 ↗ extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.53 41.0 3.28e-01 89.1% 45.2%
3768115 3274.1.1.1 ↗ extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.53 40.0 3.16e-01 87.3% 43.1%
5040200 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.53 40.0 3.63e-01 87.3% 70.0%
4937992 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.53 40.0 3.68e-01 89.1% 70.0%
4838879 3274.1.1.1 ↗ extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.52 39.0 3.61e-01 87.3% 68.8%
3989353 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.52 37.0 3.07e-01 100.0% 36.8%
3742742 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.52 39.0 3.24e-01 87.3% 50.4%
3595183 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 3.69e-01 89.1% 74.7%
4886524 3274.1.1.1 ↗ extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.51 39.0 3.75e-01 87.3% 86.2%
3640406 212.1.1.18 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Lon_C 0.51 43.0 3.35e-01 100.0% 79.2%
4951742 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.50 44.0 4.20e-01 100.0% 95.4%
D2 medium residues 73-121
PDB
Domain cluster: representative