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MW825358.1__QVD49093.1__LUCX_23__00023

Bact-Vir

MW825358.1__QVD49093.1__LUCX_23__00023

Identity

Accession:
MW825358 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_vB_XciM_LucasX

TaxID: 2829408

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-143
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.58 34.0 4.21e-01 74.8% 100.0%
3dwbA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.56 49.0 3.73e-01 99.2% 82.9%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.56 48.0 4.60e-01 95.1% 97.2%
3djbA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.56 39.0 4.28e-01 82.9% 91.7%
2n7zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 36.0 3.82e-01 92.7% 79.2%
2qq8A03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.53 37.0 3.60e-01 73.2% 95.1%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 30.0 3.41e-01 73.2% 75.9%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.50 34.0 3.43e-01 99.2% 68.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3789516 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.62 37.0 4.55e-01 72.4% 93.7%
3992032 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.59 43.0 4.66e-01 74.8% 94.0%
3272359 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.59 37.0 3.93e-01 78.0% 72.4%
3728531 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.58 37.0 3.93e-01 79.7% 70.9%
3167747 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.58 38.0 4.36e-01 82.1% 95.3%
3608391 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 45.0 4.33e-01 95.9% 71.0%
4373897 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.58 36.0 4.22e-01 74.0% 100.0%
3679700 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.57 33.0 3.45e-01 78.9% 60.9%
3741635 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.57 36.0 3.95e-01 75.6% 78.0%
5075040 601.14.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.57 37.0 3.93e-01 99.2% 74.5%
3632380 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.56 42.0 3.43e-01 78.9% 82.1%
4223095 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.56 35.0 4.08e-01 75.6% 96.2%
3538468 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.55 38.0 3.95e-01 71.5% 89.0%
3377242 109.4.1.204 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ 0.53 41.0 3.54e-01 82.9% 92.5%
3712734 5054.1.1.12 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › NCA2 0.52 39.0 3.51e-01 79.7% 60.0%
3518945 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.50 37.0 3.47e-01 76.4% 95.3%