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MW825358.1__QVD49225.1__LUCX_155__00155

Bact-Vir

MW825358.1__QVD49225.1__LUCX_155__00155

Identity

Accession:
MW825358 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_vB_XciM_LucasX

TaxID: 2829408

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-96
PDB
Domain cluster: rep: MZ348422.1__QYN80012.1__X__00119__D31-143
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.71 57.0 5.82e-01 100.0% 90.0%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 41.0 4.41e-01 100.0% 70.9%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 54.0 4.83e-01 92.6% 92.6%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 36.0 3.29e-01 80.0% 45.2%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.57 40.0 2.91e-01 74.7% 37.7%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.50e-01 98.9% 84.0%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.56 36.0 4.06e-01 72.6% 89.9%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 38.0 4.32e-01 96.8% 100.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.90e-01 86.3% 85.2%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.55 44.0 3.80e-01 87.4% 69.9%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 45.0 3.14e-01 91.6% 75.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.87e-01 86.3% 85.1%
3rjuA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 44.0 3.00e-01 89.5% 72.9%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 44.0 3.08e-01 91.6% 42.1%
6bs6B01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 32.0 3.25e-01 100.0% 60.9%
4gdnC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 43.0 3.01e-01 91.6% 72.3%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.39e-01 82.1% 99.4%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.52 45.0 3.98e-01 100.0% 85.9%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 43.0 3.05e-01 91.6% 42.9%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.37e-01 88.4% 53.8%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 39.0 2.95e-01 80.0% 81.2%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 4.46e-01 100.0% 98.9%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.52 42.0 4.06e-01 91.6% 99.1%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.51 40.0 2.81e-01 87.4% 79.3%
5b0hA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.51 42.0 3.81e-01 92.6% 95.5%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 2.87e-01 91.6% 73.7%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 37.0 2.92e-01 88.4% 36.3%
2lm3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 43.0 3.48e-01 100.0% 79.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3772640 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.66 50.0 4.57e-01 100.0% 61.6%
3528111 10.21.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 0.65 49.0 4.53e-01 100.0% 61.6%
4182548 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.59 47.0 4.74e-01 86.3% 98.9%
4216985 331.19.1.2 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.59 47.0 4.97e-01 91.6% 97.6%
3944566 809.1.1.10 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › EndoU_bacteria 0.58 32.0 3.86e-01 81.1% 83.3%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 34.0 3.88e-01 71.6% 81.4%
3483268 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 36.0 3.97e-01 100.0% 82.7%
3230771 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 40.0 4.15e-01 100.0% 80.0%
3622643 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 40.0 4.19e-01 100.0% 84.7%
3574976 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 31.0 3.76e-01 87.4% 90.9%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 39.0 4.21e-01 100.0% 88.7%
4108467 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.55 45.0 4.75e-01 93.7% 97.6%
3212411 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 42.0 3.18e-01 83.2% 40.4%
4930594 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 38.0 4.16e-01 91.6% 96.0%
3281632 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.54 44.0 2.96e-01 89.5% 73.7%
3649955 6.1.1.12 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Agglutinin 0.54 42.0 3.58e-01 85.3% 90.6%
4436049 1190.1.1.1 ↗ a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF 0.54 35.0 3.52e-01 74.7% 64.0%
3496211 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.53 35.0 3.86e-01 100.0% 90.0%
3205174 5.1.4.245 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7099 0.53 44.0 2.94e-01 89.5% 26.4%
3475247 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.53 33.0 3.75e-01 100.0% 84.3%
3624656 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 39.0 4.31e-01 84.2% 100.0%
3669066 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 38.0 3.34e-01 81.1% 92.3%
2559760 216.1.1.5 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › BRE 0.51 38.0 3.54e-01 80.0% 82.6%